Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00040 ATGTATCAAAATTCATTACATAGTCTTCAACTGCATCTCGTGTTTCTGGTGGATTCTGAAACCAATATTGGGGGTCTTCCATTTGGTGACAAAGTTTCCATCATTGGAGGTTTCATTATGCATCATGGAAAGCTTACTTGTTCTCTTGAATATCACATTTGGCATAGCTATCAATGTGATCAGGATAAAGAGGCTGTCTTCCAAAAGCAGGGAAATAATGGGAACGTTTGGGATATGATGACTTTTCAATTCATAAGTCCGGTAATGAAGCATGGTGTGGTAAAGCAATTAGACTCTGAAGATCTGCTGCCGCTACCTACTGATATGTGTCCTTTCTCCTGTCATGATATAATTTTGTCCTGCTGGCGAGCTCAACTGAGTAATAATGGTTCAAACCCATCCTTGTTAAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTAATTAATGATTGTAGTGGTTTTGCGGGACCATTGCTTCTTAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATATGGATGGGTACTTACTGGCATTATCATTGGGTCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCACCTTTCCAAACTGAAGCTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCAATGTGTGAACCTAGCAGAGCGTTCCAAATTCTCAAATGGAGAAATTCAGACGTTCATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAACAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTGTTGATACCAGTGAATAAGTGGATATCAAAGTTGATTGCAAGTGCCACTGAGAAAATGATGAAGGAAAAGGATGAAAGGATTCGTAGGACAGGAGAACTTCTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGAGACGAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCAACACTTTTTTCTCTTTTCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTGAATTCATTCCCTTGGGTGATAAATGGATTGATTGATGCCATTATATCCTCCAGACGGTTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGGGAGAGACCAATTCATGTTCAACATCATTCCTGAGTAAACAGCCTGATTCTTTACAAGGTTTGGCTGTCTTTATGCAAGACGCATGTTGTACTTGGTCAAGCAGTGATGAACAAACATTAAATTTGGTGTTGAATCATGTGACTCTAAGCCTGTCCAAGGGCTCCTTTGTTGCAATTATTGGAGAGGTTGGTTCAGGCAAGTCATCCCTGTTATATTCAATTCTTGGAGAAATGCGGCTTGCTCATGGATCTATTTATTCTAACGGTTCCGTAGCCTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGTGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTACACAGATACACTACATGCGTGTGCATTACATGTTGATATCTCATTGATGGTTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCTACGTATCATGACTCAGATGTTGTTATGCTCGATGATGTCCTGAGTGCAGTTGATGTACAAGTAGCTCAGTGGATCTTACACAATGCCATTCGAGGTCCTCTTATGCAGGGCAAAACTCGATTGCTCTGTACCCACAACATTCAGGCTATATCTTCTGCTGATGTGATTGTTGTAATGGACAAGGGACACGTAAAGTGGATGGGAAGTTCAGCTGACTTTCCAATTTCTTCGTATACAGCATTCACCCCATTGAATGAAATTGATTCAGCTTTACACAATCATAAACAATCTTGTAGCATAAATCCTTCTTCCAAATCCAAGGAGCTGTCTCTTCCTGATAGAGTTATTATGCATACTCCGGAGGGAGCAGAGGATGTAATTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTCGAACTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGCTCATCACGGTTGTTATATGCCTGTCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTATCTTATTGGGTTGATACAACAACAGAAAGCGGTCAAACAAGATACTCTCTGTCATTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAACTAAGGTACACAACAGACTCCTCAGCAAACTTATCAATGCACCTGTGCAGTTCTTTGATCAGACCCCAGGTGGAAGAATATTGAACAGGTTATCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTTGGCCTGTTGGGTATTGCAATAATTTTGTCTTATGTACAGGTCTTTTTCTTAGTCCTGCTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATATACATCTTTCACCGAAACACTTGATGGATCATCGACTATTAGGGCGTTTAAATCTAAGGACTTTTTCTTTGCGAAATTCACTGATCATATGACATTGTATCAGAAGACTTCATACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCGTTCATAGCTCTGCTGGCTGTTGTCGGATCTCATGGCAGACTGCCTATCAACTTTGGTACCCCAGGGCTGGTAGGATTAGCCCTCTCTTACGCAGCTCCAATTGTGTCCTTGTTGGGGAGTTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTCCAATACATGGACATTCCACAAGAAGAACAAGCCGGATGCCTATGCTTGAATTCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAGAATGTTACTTTGAAATATTTGCCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCAGGAGGGGCACAGGTTGGAATAATCGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCCATCACTGTTGATGGCATGGACATTAACAATATTCCTGTCAGAGAACTACGTGCACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTAGATCCATTAAAAAAAATGGATGACTTGAAAATTTGGAATGCATTGGAGAAGTGCCATGTAAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTTGTTAAGGAAGCGGGGCTGTCATTTTCTGTTGGCCAGCGGCAGCTTTTTTGTCTTGCACGTGCACTTCTCAAATCTTCGAAGGTTCTGTGTTTGGATGAGTGCACGGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAAGTACCATATCCAGTGAATGCGAAGGCATGACAGTGATTACAATTGCTCACCGGATTTCAACTGTTTTGAATATGGATAACATTCTGATTCTTGACCACGGGAACCTGGCTGAACAAGGAAATCCACAGGTTCTTCTGAAAGATGACTCCTCTATATTTTCTAGTTTTGTCAAAGCTTCATCAATGTAA 3981 0.4047 MYQNSLHSLQLHLVFLVDSETNIGGLPFGDKVSIIGGFIMHHGKLTCSLEYHIWHSYQCDQDKEAVFQKQGNNGNVWDMMTFQFISPVMKHGVVKQLDSEDLLPLPTDMCPFSCHDIILSCWRAQLSNNGSNPSLLRALCSAYGWPYLRLGLLKVINDCSGFAGPLLLNKLIQFLQQGSVNMDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCQCVNLAERSKFSNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIASATEKMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKVGETNSCSTSFLSKQPDSLQGLAVFMQDACCTWSSSDEQTLNLVLNHVTLSLSKGSFVAIIGEVGSGKSSLLYSILGEMRLAHGSIYSNGSVAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLHACALHVDISLMVGGDMAYIGEKGVNLSGGQRARLALARATYHDSDVVMLDDVLSAVDVQVAQWILHNAIRGPLMQGKTRLLCTHNIQAISSADVIVVMDKGHVKWMGSSADFPISSYTAFTPLNEIDSALHNHKQSCSINPSSKSKELSLPDRVIMHTPEGAEDVIEVELRKEGKVELGVYKNYAVFTGWLITVVICLSAILMQASRNGNDLWLSYWVDTTTESGQTRYSLSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSKDFFFAKFTDHMTLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALLAVVGSHGRLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLCLNSDWPNQGVIEFQNVTLKYLPSLPAALCNLSFRIAGGAQVGIIGRTGAGKSSVLNALFRLTPICTGSITVDGMDINNIPVRELRAHLAIVPQSPFLFEGSLRDNLDPLKKMDDLKIWNALEKCHVKEEVEVAGGLDILVKEAGLSFSVGQRQLFCLARALLKSSKVLCLDECTANVDIQTASLLQSTISSECEGMTVITIAHRISTVLNMDNILILDHGNLAEQGNPQVLLKDDSSIFSSFVKASSM 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00040 1326 FunFam ATP-binding cassette (ABC) transporter, putative 1076 1323 - -
Gabi3302g00040 1326 Gene3D ABC transporter type 1, transmembrane domain 125 445 IPR036640 GO:0005524|GO:0016020
Gabi3302g00040 1326 Gene3D ABC transporter type 1, transmembrane domain 735 1073 IPR036640 GO:0005524|GO:0016020
Gabi3302g00040 1326 FunFam ABC transporter C family member 5 730 1072 - -
Gabi3302g00040 1326 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 75 1324 - -
Gabi3302g00040 1326 CDD ABC_6TM_MRP7_D1_like 150 435 - -
Gabi3302g00040 1326 Pfam ABC transporter transmembrane region 151 415 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00040 1326 Pfam ABC transporter transmembrane region 768 1015 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00040 1326 CDD ABCC_MRP_domain1 473 674 - -
Gabi3302g00040 1326 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 152 427 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00040 1326 Pfam ABC transporter 1107 1253 IPR003439 GO:0005524
Gabi3302g00040 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 684 IPR027417 -
Gabi3302g00040 1326 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1089 1322 IPR003439 GO:0005524
Gabi3302g00040 1326 CDD ABCC_MRP_domain2 1087 1306 - -
Gabi3302g00040 1326 CDD ABC_6TM_MRP7_D2_like 766 1066 - -
Gabi3302g00040 1326 Gene3D - 460 709 IPR027417 -
Gabi3302g00040 1326 SUPERFAMILY ABC transporter transmembrane region 137 443 IPR036640 GO:0005524|GO:0016020
Gabi3302g00040 1326 Gene3D - 1076 1324 IPR027417 -
Gabi3302g00040 1326 FunFam ABC transporter C family member 13 453 708 - -
Gabi3302g00040 1326 FunFam Multidrug resistance-associated protein ABC domain protein 126 444 - -
Gabi3302g00040 1326 Pfam ABC transporter 492 624 IPR003439 GO:0005524
Gabi3302g00040 1326 SUPERFAMILY ABC transporter transmembrane region 763 1071 IPR036640 GO:0005524|GO:0016020
Gabi3302g00040 1326 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1083 1314 IPR027417 -
Gabi3302g00040 1326 ProSitePatterns ABC transporters family signature. 1225 1239 IPR017871 GO:0005524|GO:0016887
Gabi3302g00040 1326 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 767 1054 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00040 1326 SMART AAA_5 1115 1299 IPR003593 GO:0016887
Gabi3302g00040 1326 SMART AAA_5 501 675 IPR003593 GO:0016887
Gabi3302g00040 1326 ProSitePatterns ABC transporters family signature. 599 613 IPR017871 GO:0005524|GO:0016887
Gabi3302g00040 1326 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 471 698 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00040 Gabi-Chr3302 369464 396684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00040 491 724 Calmodulin-binding Proteins AT2G36910 26.482 6.95e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00040 K05674 - gmx:100814181 2188.69