Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00039 ATGATTGTTGTGCTTGGATTTTATCAGAAGTTTGGTCGAGGTGTTCAGAGATCAGATGCCCAGATGACCCTTCCCGAGAAATTTGTCCTGGAATTGGTACCAGCTGTTGGAGCATGTCTTTCACTCTTGGACATTTTTTTTCTGTGGAAGAAAGCACATAATAGCCACTTTGTTGGATATCATAAGTGGTTTTATAGTTGTTCTGAGTTGATTATGTGGACAAATATCATTTTCTTCACAAAATGTATCAAAATTCATTACATAGTCTTCAACTGCATCTCGTGTTTCTGGTGGATTCTGAAACCAATATTGGGGGTCTTCCATTTGGTGACAAAGTTTCCATCATTGGAGGTTTCATTATGCATCATGGAAAGCTTACTTGTTCTCTTGAATATCACATTTGGCATAGCTATCAATGTGATCAGGATAAAGAGGCTGTCTTCCAAAAGCAGTTTATTGGAAGATCCACTTCTTTCCAATGGCATGGACCTTGAGGAAGGTGGCAATGGTAATATTGGAAATAATGGGAACGTTTGGGATATGATGACTTTTCAATTCATAAGTCCGGTAATGAAGCATGGTGTGGTAAAGCAATTAGACTCTGAAGATCTGCTGCCGCTACCTACTGATATGTGTCCTTTCTCCTGTCATGATATAATTTTGTCCTGCTGGCGAGCTCAACTGAGTAATAATGGTTCAAACCCATCCTTGTTAAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTAATTAATGATTGTAGTGGTTTTGCGGGACCATTGCTTCTTAATAAGCTGATCCAGTTTCTTCAACAAGGTTCAGTGAATATGGATGGGTACTTACTGGCATTATCATTGGGTCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCACCTTTCCAAACTGAAGCTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCAATGTGTGAACCTAGCAGAGCGTTCCAAATTCTCAAATGGAGAAATTCAGACGTTCATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAACAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTGTTGATACCAGTGAATAAGTGGATATCAAAGTTGATTGCAAGTGCCACTGAGAAAATGATGAAGGAAAAGGATGAAAGGATTCGTAGGACAGGAGAACTTCTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTTCTAGTTGGTTGATGGAGACGAGATCTTTGGAAGTGAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCAACACTTTTTTCTCTTTTCACATTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAATGGTTTTCACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTGAATTCATTCCCTTGGGTGATAAATGGATTGATTGATGCCATTATATCCTCCAGACGGTTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGTGGGAGAGACCAATTCATGTTCAACATCATTCCTGAGTAAACAGCCTGATTCTTTACAAGGTTTGGCTGTCTTTATGCAAGACGCATGTTGTACTTGGTCAAGCAGTGATGAACAAACATTAAATTTGGTGTTGAATCATGTGACTCTAAGCCTGTCCAAGGGCTCCTTTGTTGCAATTATTGGAGAGGTTGGTTCAGGCAAGTCATCCCTGTTATATTCAATTCTTGGAGAAATGCGGCTTGCTCATGGATCTATTTATTCTAACGGTTCCGTAGCCTATGTACCACAGGTCCCTTGGATTTTATCTGGAACAGTACGTGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTACACAGATACACTACATGCGTGTGCATTACATGTTGATATCTCATTGATGGTTGGAGGTGACATGGCTTATATTGGTGAGAAAGGAGTCAACTTATCAGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCTACGTATCATGACTCAGATGTTGTTATGCTCGATGATGTCCTGAGTGCAGTTGATGTACAAGTAGCTCAGTGGATCTTACACAATGCCATTCGAGGTCCTCTTATGCAGGGCAAAACTCGATTGCTCTGTACCCACAACATTCAGGCTATATCTTCTGCTGATGTGATTGTTGTAATGGACAAGGGACACGTAAAGTGGATGGGAAGTTCAGCTGACTTTCCAATTTCTTCGTATACAGCATTCACCCCATTGAATGAAATTGATTCAGCTTTACACAATCATAAACAATCTTGTAGCATAAATCCTTCTTCCAAATCCAAGGAGCTGTCTCTTCCTGATAGAGTTATTATGCATACTCCGGAGGGAGCAGAGGATGTAATTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTCGAACTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGCTCATCACGGTTGTTATATGCCTGTCAGCTATTCTGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTATCTTATTGGGTTGATACAACAACAGAAAGCGGTCAAACAAGATACTCTCTGTCATTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGCTTACAAGCAGCAACTAAGGTACACAACAGACTCCTCAGCAAACTTATCAATGCACCTGTGCAGTTCTTTGATCAGACCCCAGGTGGAAGAATATTGAACAGGTTATCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTCTCCTAGCTAATTTTGTTGGCCTGTTGGGTATTGCAATAATTTTGTCTTATGTACAGGTCTTTTTCTTAGTCCTGCTATTGCCATTTTGGTATATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATATACATCTTTCACCGAAACACTTGATGGATCATCGACTATTAGGGCGTTTAAATCTAAGGACTTTTTCTTTGCGAAATTCACTGATCATATGACATTGTATCAGAAGACTTCATACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCGTTCATAGCTCTGCTGGCTGTTGTCGGATCTCATGGCAGACTGCCTATCAACTTTGGTACCCCAGGGCTGGTAGGATTAGCCCTCTCTTACGCAGCTCCAATTGTGTCCTTGTTGGGGAGTTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTCCAATACATGGACATTCCACAAGAAGAACAAGCCGGATGCCTATGCTTGAATTCAGATTGGCCAAATCAAGGAGTTATTGAATTCCAGAATGTTACTTTGAAATATTTGCCATCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCAGGAGGGGCACAGGTTGGAATAATCGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCCATCACTGTTGATGGCATGGACATTAACAATATTCCTGTCAGAGAACTACGTGCACATTTGGCTATTGTTCCTCAGAGTCCATTCTTGTTTGAAGGATCATTAAGGGATAACCTAGATCCATTAAAAAAAATGGATGACTTGAAAATTTGGAATGCATTGGAGAAGTGCCATGTAAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATATTCTTGTTAAGGAAGCGGGGCTGTCATTTTCTGTTGGCCAGCGGCAGCTTTTTTGTCTTGCACGTGCACTTCTCAAATCTTCGAAGGTTCTGTGTTTGGATGAGTGCACGGCCAATGTAGACATTCAAACTGCTTCACTGCTGCAAAGTACCATATCCAGTGAATGCGAAGGCATGACAGTGATTACAATTGCTCACCGGATTTCAACTGTTTTGAATATGGATAACATTCTGATTCTTGACCACGGGAACCTGGCTGAACAAGGAAATCCACAGGTTCTTCTGAAAGATGACTCCTCTATATTTTCTAGTTTTGTCAAAGCTTCATCAATGTAA 4287 0.4035 MIVVLGFYQKFGRGVQRSDAQMTLPEKFVLELVPAVGACLSLLDIFFLWKKAHNSHFVGYHKWFYSCSELIMWTNIIFFTKCIKIHYIVFNCISCFWWILKPILGVFHLVTKFPSLEVSLCIMESLLVLLNITFGIAINVIRIKRLSSKSSLLEDPLLSNGMDLEEGGNGNIGNNGNVWDMMTFQFISPVMKHGVVKQLDSEDLLPLPTDMCPFSCHDIILSCWRAQLSNNGSNPSLLRALCSAYGWPYLRLGLLKVINDCSGFAGPLLLNKLIQFLQQGSVNMDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCQCVNLAERSKFSNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISKLIASATEKMMKEKDERIRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKVGETNSCSTSFLSKQPDSLQGLAVFMQDACCTWSSSDEQTLNLVLNHVTLSLSKGSFVAIIGEVGSGKSSLLYSILGEMRLAHGSIYSNGSVAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLHACALHVDISLMVGGDMAYIGEKGVNLSGGQRARLALARATYHDSDVVMLDDVLSAVDVQVAQWILHNAIRGPLMQGKTRLLCTHNIQAISSADVIVVMDKGHVKWMGSSADFPISSYTAFTPLNEIDSALHNHKQSCSINPSSKSKELSLPDRVIMHTPEGAEDVIEVELRKEGKVELGVYKNYAVFTGWLITVVICLSAILMQASRNGNDLWLSYWVDTTTESGQTRYSLSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNRLLSKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFIMNILLANFVGLLGIAIILSYVQVFFLVLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSKDFFFAKFTDHMTLYQKTSYTEIVASLWLSLRLQLLAAFIISFIALLAVVGSHGRLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLCLNSDWPNQGVIEFQNVTLKYLPSLPAALCNLSFRIAGGAQVGIIGRTGAGKSSVLNALFRLTPICTGSITVDGMDINNIPVRELRAHLAIVPQSPFLFEGSLRDNLDPLKKMDDLKIWNALEKCHVKEEVEVAGGLDILVKEAGLSFSVGQRQLFCLARALLKSSKVLCLDECTANVDIQTASLLQSTISSECEGMTVITIAHRISTVLNMDNILILDHGNLAEQGNPQVLLKDDSSIFSSFVKASSM 1428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00039 1428 Pfam ABC transporter transmembrane region 870 1117 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00039 1428 Pfam ABC transporter transmembrane region 253 517 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00039 1428 FunFam ABC transporter C family member 13 555 810 - -
Gabi3302g00039 1428 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 869 1156 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00039 1428 FunFam ABC transporter C family member 5 832 1174 - -
Gabi3302g00039 1428 SMART AAA_5 1217 1401 IPR003593 GO:0016887
Gabi3302g00039 1428 SMART AAA_5 603 777 IPR003593 GO:0016887
Gabi3302g00039 1428 SUPERFAMILY ABC transporter transmembrane region 865 1173 IPR036640 GO:0005524|GO:0016020
Gabi3302g00039 1428 Pfam ABC transporter 594 726 IPR003439 GO:0005524
Gabi3302g00039 1428 Gene3D - 562 811 IPR027417 -
Gabi3302g00039 1428 FunFam Multidrug resistance-associated protein ABC domain protein 228 546 - -
Gabi3302g00039 1428 ProSitePatterns ABC transporters family signature. 1327 1341 IPR017871 GO:0005524|GO:0016887
Gabi3302g00039 1428 CDD ABC_6TM_MRP7_D2_like 868 1168 - -
Gabi3302g00039 1428 ProSitePatterns ABC transporters family signature. 701 715 IPR017871 GO:0005524|GO:0016887
Gabi3302g00039 1428 SUPERFAMILY ABC transporter transmembrane region 239 545 IPR036640 GO:0005524|GO:0016020
Gabi3302g00039 1428 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 573 800 IPR003439 GO:0005524
Gabi3302g00039 1428 CDD ABCC_MRP_domain1 575 776 - -
Gabi3302g00039 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1185 1416 IPR027417 -
Gabi3302g00039 1428 CDD ABC_6TM_MRP7_D1_like 252 537 - -
Gabi3302g00039 1428 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 176 1426 - -
Gabi3302g00039 1428 Gene3D ABC transporter type 1, transmembrane domain 227 547 IPR036640 GO:0005524|GO:0016020
Gabi3302g00039 1428 Gene3D ABC transporter type 1, transmembrane domain 837 1175 IPR036640 GO:0005524|GO:0016020
Gabi3302g00039 1428 CDD ABCC_MRP_domain2 1189 1408 - -
Gabi3302g00039 1428 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 589 786 IPR027417 -
Gabi3302g00039 1428 Gene3D - 1178 1426 IPR027417 -
Gabi3302g00039 1428 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 254 529 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi3302g00039 1428 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1191 1424 IPR003439 GO:0005524
Gabi3302g00039 1428 FunFam ATP-binding cassette (ABC) transporter, putative 1178 1425 - -
Gabi3302g00039 1428 Pfam ABC transporter 1209 1355 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00039 Gabi-Chr3302 368303 396684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00039 593 826 Calmodulin-binding Proteins AT2G36910 26.482 6.30e-20 95.1