LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3302g00029	ATGCCTTCAAGACCCTTCCCTCATACAAGTCCTAATTTTTTCACCAAAACAAGGGTCCTGTTCTTAGCACTCACCATTTCAGCTTCTGTTGTTATTTTCTGCTCAGTACTTTATTTCCTTTACCATCTTTGGCATTCTCTTGTGCACAGAGCTAAGACTATCCCCTTTGATGCAAGTGCTCCCTTGAAGCTCCAAAGATTCTCATACAAGGATTTAAAGCAAGCCACCAATGGCTTTGACACTGCCAATGTCATTGGTAAAGGTGGGTCTGGCACTGTTTTCAGTGGAGTACTTAAAGATGGGAAATTGATTGCTATCAAGCGCCTAGACACGCTGTCTTTGCAGTCAGAACGAGAGTTTCAAAATGAGCTGCAGATTCTTGGAGGGTTGAGATCGCCGTTCCTGGTGACCCTCTTGGGCTATTGTGTGGAAAAGAACAAAAGAGTGTTGGTGTATGAATATATGCCCAACAGAAGCTTGCAAGAGTCCCTCTTTGGAAATGGGTGTTTGAGTATGAGTTGGGAGAGCAGGTTTTGCATAATATTGGATGTTGCTAGAGCATTGGAGTTCTTGCACCTTGGATGTGATCCACCAGTGATCCATGGAGATATCAAGCCAAGCAATGTTCTGCTTGATGCAGAGTACCGTGGGAAGATCTCAGACTTCGGATTGTCAAGGATTAAGGTGGAGGGTGAATTTGGTTTGGACTTGTTTAGCCAGGACCTGGGGAAGAGCCAGGAGCTATGGAAAAGCCAAGAGCTTTCAGGTAATTTAACTGCAGAAACTCCGGCTATTGGTACTCCAGTTGAGAGTGTTAATGAAGTTGATTTTGCTTTAGCTTTGCAAGCCTCTTCTTCATCCAAAAATAGCAGGGCCTGTTTAAATGTTAGAGCTTTGAACTTGAATTCTTTGAATTATAACGCTAATATTGCCGGTGAAAGTGGAATTAGGACTACAAATGCAAAGGGTAAGGAGATTTCAACTTTGGATATAGGAGGGGATGATTGGAATAATAAGTTTGTTCCTTATGATGATGAGTTTTCTAGCATTGATTATAGTAAGGAGTTAACTGTTAATGCTTCTTTGGTGGATGATGATAAGGCAGATGGGAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAGTGGTGAATTATGTAGTAAAGACTATGTCACGGAGTGGATAGGGAGTCAAATTGGTCCATCAAACTCTGATTGGGATGATGGTAAGAACAATGCTCATGAGAAAGCAGAGTTGGAAAATTCAAGTCCAATAGATAAAGCCAATAATGCAAATGGACCCCAATTACAGGTGTTTGGTATAGGGAATACAGATAATGGGGTTGAGAATGAAGAATCGAGGGGAAAGAAAAACCACAAGAAGAAGCATAGGAAGATGCAAGAATGGTGGAAAGAAGAGCATCTTGCTGAATTAAGCAAGAAAACCAGCAAGCTGAAAAATCTTCAAACTAAGTGGAAGAAAGGCTTGAAAGTGCCCCATTTTGATTTGGGTAGAAGGTTTTATCTTTGCAGACGTAAGAACTTCGGAGAGGAGGATCAGAATGAGTGTGATCAAAATGGGGAGTTTAGCTTCAGAAGAGGTTGGAAGAAGAAAAGTACTCGTTCCATTGGAAGTGACATGTGGAGCGGAGATCTTTTAAGCCGCGAGCTCAGCAGCACAACTAGCATGAGAGGGACACTGTGTTATGTAGCACCAGAATATGGCGGCTGTGGATTCTTAATGGAGAAAGCTGACATTTACAGCTTTGGAGTTTTGATTCTTGTAATTGTGTCAGGTAGAAGACCATTACATGTTCTTGCATCCCCCATGAAGCTAGAGAAAGCTAATTTAATAAGCTGGTGTAGGCACTTGGCTCAAGTTGGTAACATTTTAGAACTAGTAGATGAGAGATTGAAAGATGATTACAACAAGGAACAAGCAAGCCTGTGTATCAACTTGGCACTCACCTGCATACAGAAAATTCCAGAGTTGCGGCCAGATATTGGGGATATTGTTAAGATTTTGAAGGGGGAGATGGACCTTCCACCACTTCCATTTGAGTTCTCCCCTTCTCCACCTTCCAAATTACACAGCAGATCGAGGAGAAAACAAAAGGGCACTCCAGAGTAG	2136	0.4228	MPSRPFPHTSPNFFTKTRVLFLALTISASVVIFCSVLYFLYHLWHSLVHRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFSGVLKDGKLIAIKRLDTLSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYEYMPNRSLQESLFGNGCLSMSWESRFCIILDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEYRGKISDFGLSRIKVEGEFGLDLFSQDLGKSQELWKSQELSGNLTAETPAIGTPVESVNEVDFALALQASSSSKNSRACLNVRALNLNSLNYNANIAGESGIRTTNAKGKEISTLDIGGDDWNNKFVPYDDEFSSIDYSKELTVNASLVDDDKADGKQWGKDWWWRQDGSGELCSKDYVTEWIGSQIGPSNSDWDDGKNNAHEKAELENSSPIDKANNANGPQLQVFGIGNTDNGVENEESRGKKNHKKKHRKMQEWWKEEHLAELSKKTSKLKNLQTKWKKGLKVPHFDLGRRFYLCRRKNFGEEDQNECDQNGEFSFRRGWKKKSTRSIGSDMWSGDLLSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQVGNILELVDERLKDDYNKEQASLCINLALTCIQKIPELRPDIGDIVKILKGEMDLPPLPFEFSPSPPSKLHSRSRRKQKGTPE	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3302g00029	711	FunFam	putative receptor-like protein kinase At1g80870	155	266	-	-
	Gabi3302g00029	711	MobiDBLite	consensus disorder prediction	687	711	-	-
	Gabi3302g00029	711	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	48	154	-	-
	Gabi3302g00029	711	Gene3D	Phosphorylase Kinase; domain 1	46	154	-	-
	Gabi3302g00029	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	199	211	IPR008271	GO:0004672\|GO:0006468
	Gabi3302g00029	711	PANTHER	OS07G0586332 PROTEIN	11	706	IPR044576	-
	Gabi3302g00029	711	SMART	serkin_6	79	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3302g00029	711	Coils	Coil	473	493	-	-
	Gabi3302g00029	711	FunFam	Receptor-like serine/threonine-protein kinase At4g25390	534	683	-	-
	Gabi3302g00029	711	ProSitePatterns	Protein kinases ATP-binding region signature.	85	107	IPR017441	GO:0005524
	Gabi3302g00029	711	MobiDBLite	consensus disorder prediction	403	467	-	-
	Gabi3302g00029	711	Gene3D	Transferase(Phosphotransferase) domain 1	535	683	-	-
	Gabi3302g00029	711	Gene3D	Transferase(Phosphotransferase) domain 1	155	266	-	-
	Gabi3302g00029	711	MobiDBLite	consensus disorder prediction	425	450	-	-
	Gabi3302g00029	711	Pfam	Protein kinase domain	81	229	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3302g00029	711	ProSiteProfiles	Protein kinase domain profile.	79	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi3302g00029	711	MobiDBLite	consensus disorder prediction	410	424	-	-
	Gabi3302g00029	711	SUPERFAMILY	Protein kinase-like (PK-like)	59	696	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3302g00029	Gabi-Chr3302	308576	311068	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3302g00029	545	677	Receptor kinase-like Gene Family	AT3G58690	31.343	9.93e-14	72.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XI	Gabi3302g00029		Pkinase	3e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3302g00029	-		-	gmx:100800845	1244.57