Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00021 ATGGTTTTCTTACGAACACTGTTCTTCGTTTTACTTGCAACATTTGGTCACTCCCTTCCAAGGCGCCACCACCACCATCTTTCTCATTCTTTAACTACAGATAAAGCTGCTCTTCTGGAATTCAAAAAAACAATCATATCAGACCCGCATTCCTCACTTGCTAACTGGGCTGAAGCTGCTCATGTCTGCAACTTCACAGGTGTTGAATGTGACAAATTCCATCACCGTGTTATACGACTAATCCTTAAAGATACTGATTTAGTGGGGCTGCTTTCACCCGTCCTTTCCAATCTCACTGGACTGCACCACCTTGAGATTGTTCACAATCACTTGTATGGCATTATTCCACCTGAATTTTCATACCTCAGACGGCTTCACCGTATCATTCTCGATGGGAACAATTTGCATGGCTCAATACCGGAGTCCTTTTCTCACCTTTCCAAGCTTATCCTTCTACTTATCAAGGAAAATAATATAACAGGATCACTTCCTTCATCTATCTTTTCCAATTGCACTCTACTAGAGGTTGTGGACTTTTCCACCAACTTCCTAACTGGTCAAATCCCAGAAGAGATTGGAAACTGCCCAGGCCTGTGGAGTCTCAATTTATACAATAATCAATTTACCGGACAGCTTCCTTTCTCTTTGACTAACATATCCCTTATAAATTTAGACATCGAGTACAATTATCTATATGGTGAATTGCCTACAAAGTTTGTAAGCAGCTGGCCCAATCTCCTTTACCTTCATTTATCATACAATCATTTGGTAAGTCATGATAACAACACCAATCTTGATCCATTTTTCACTGCTCTTAGAAACAACAGTGCTCTCGAGGAGCTTGAATTGGCAGGCATGGGCCTTGGGGGAAGGTTCTCCAATACTGTCGCCAGTCAACTAGGCTCCAGTCTAAGAACTCTACTCCTGCAGGAAAACCAAATTTTTGGATCAATTCCTCACAGCATAGCAAATCTTTCAAGGCTTTCGATCCTGAATTTAACATCCAATCTTCTAAATGGAACTATTTCCTCTGAGACCTGCAGATTACCAAACTTGGAACAACTTCTCTTATCATACAACCTTCTGAAGACTTCAATTCCGGAAGCATTTGGCAAGTGTCAACATCTGGGTCTACTAGATCTGTCACACAATGAATTTTCAGGTAGGATTCCAGAAAGTTTGGGAAATTTGGTCCGGCTAAATTCTTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATACCTCCTACATTGGGACGGTGCACTAATCTGTACAAGCTAGACTTGTCCTATAATAGATTAACAGGAAGCATCCCACTTGAACTCTCAGGCTTGCATGAGCTCAGAATTTTCATAAATGTCTCGCATAATCATCTTGAAGGCCCCCTGCCGATTGAGCTCAGCAAATTAGAAAAGGTTCAGGAGATGGATCTTTCATCAAATCACCTAACTGGAAGTATCTTCCCTCAGATAGCAGGATGCATTGCTGTCTCTATGATAAATTTTTCAAACAATTCTCTTCAAGGGGAGCTCCCAGAATCCTTAGGAGATCTGAAGAACCTTGAATCTCTTGATGTTTCAAGAAATCAATTATCTGGATTGATACCAGCAACACTTGGTAAAATTGACACGCTCACTTTTCTCAATTTATCATTTAACAACCTGGAGGGAATGGTTCCATCTGGTGGTATCTTTAATTCAATGTCATATTTATCATTCTTAGGAAATCCACAACTTTGTGGGACAATTACAGGCTTATCCCCGTGCTCTCATAAGAGACGATGGTTTCAAAGACGTTTGTTCTTGATTATATTCATCTTGGTCATTTTCACATCAACATTCTTGTCAATAATTTGCTGTGTAATTGGATGCAAGCATCTTAAAGTAATCATTTTGTCTCGGAGGACTGAGGGACCAGCTAGACCCGAGTTGATAAGTAACTTCCCAAGGATCACGCATAAGGAATTATCGGATGCCACTGGAGGATTTGACAATCAGAGACTTCTTGGATCAGGTAGTTACGGACATGTTTACGGGGGAGTTCTTCCGGACGGGACACCAATAGCAGTCAAGGTGCTGCATTTGCAATCTGGAAATTCTAGCAAGAGCTTTAATAGAGAATGCCAAGTTTTGAAGAGAATTAGGCACAGGAATCTGATAAGAATTATCACAGCATGTAGCCTACCTGGTTTTAAGGCTCTTGTTCTACCTTATATGGCCAATGGGAGCTTGGAGAGCCGCCTCTATCCTTCTTCTGGATCATCAGACTTGAGTATAATCCTGAGGGTGAATATTTGCAGTGATATAGCTGAAGGGATGGCCTATTTGCATCATCATTCTCCAGTTAGAGTCATACACTGTGATCTAAAACCAAGCAATGTTCTTCTCAATGATGACATGACAGCTCTAGTTTCTGATTTTGGGATTGCAAGGTTAATCATGAGTGTCGGAGGAGGAAATGGTGGGGCTACTGACCACATGGGGCACTCTACTGCAAATTTGTTATGTGGATCCATTGGATACATTGCACCAGATGACATGTTTGTTGGCGGGTTAAGTCTGCACAAATGGGTAAAAAGTCACTATCATGGAAGGGCAGAAAAAGTTGTAGACCCTGCTTTGGTAACAGCTTCAAGAGATCAATCCCAAGAGGTTCAGAAGATGTGGGAAATTGCTATTGGGGAGTTAATTGAGTTGGGGATCCTTTGCACACAGGAGTCGCCTTCAACAAGACCTACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAGATACCTTAATGGGGACACAAGTGGAACTTTTGCCTCCTCTCTTGGAATTTCATCTTCTACAATAGGTGGTGATTAA 2853 0.4143 MVFLRTLFFVLLATFGHSLPRRHHHHLSHSLTTDKAALLEFKKTIISDPHSSLANWAEAAHVCNFTGVECDKFHHRVIRLILKDTDLVGLLSPVLSNLTGLHHLEIVHNHLYGIIPPEFSYLRRLHRIILDGNNLHGSIPESFSHLSKLILLLIKENNITGSLPSSIFSNCTLLEVVDFSTNFLTGQIPEEIGNCPGLWSLNLYNNQFTGQLPFSLTNISLINLDIEYNYLYGELPTKFVSSWPNLLYLHLSYNHLVSHDNNTNLDPFFTALRNNSALEELELAGMGLGGRFSNTVASQLGSSLRTLLLQENQIFGSIPHSIANLSRLSILNLTSNLLNGTISSETCRLPNLEQLLLSYNLLKTSIPEAFGKCQHLGLLDLSHNEFSGRIPESLGNLVRLNSLFLNNNLLSGTIPPTLGRCTNLYKLDLSYNRLTGSIPLELSGLHELRIFINVSHNHLEGPLPIELSKLEKVQEMDLSSNHLTGSIFPQIAGCIAVSMINFSNNSLQGELPESLGDLKNLESLDVSRNQLSGLIPATLGKIDTLTFLNLSFNNLEGMVPSGGIFNSMSYLSFLGNPQLCGTITGLSPCSHKRRWFQRRLFLIIFILVIFTSTFLSIICCVIGCKHLKVIILSRRTEGPARPELISNFPRITHKELSDATGGFDNQRLLGSGSYGHVYGGVLPDGTPIAVKVLHLQSGNSSKSFNRECQVLKRIRHRNLIRIITACSLPGFKALVLPYMANGSLESRLYPSSGSSDLSIILRVNICSDIAEGMAYLHHHSPVRVIHCDLKPSNVLLNDDMTALVSDFGIARLIMSVGGGNGGATDHMGHSTANLLCGSIGYIAPDDMFVGGLSLHKWVKSHYHGRAEKVVDPALVTASRDQSQEVQKMWEIAIGELIELGILCTQESPSTRPTMLDAADDLDRLKRYLNGDTSGTFASSLGISSSTIGGD 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00021 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Gabi3302g00021 950 Gene3D Ribonuclease Inhibitor 222 595 IPR032675 -
Gabi3302g00021 950 SMART LRR_typ_2 122 145 IPR003591 -
Gabi3302g00021 950 SMART LRR_typ_2 397 421 IPR003591 -
Gabi3302g00021 950 SMART LRR_typ_2 518 541 IPR003591 -
Gabi3302g00021 950 SMART LRR_typ_2 146 170 IPR003591 -
Gabi3302g00021 950 SMART LRR_typ_2 349 372 IPR003591 -
Gabi3302g00021 950 Pfam Protein kinase domain 664 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00021 950 SMART serkin_6 663 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00021 950 PRINTS Leucine-rich repeat signature 518 531 - -
Gabi3302g00021 950 PRINTS Leucine-rich repeat signature 424 437 - -
Gabi3302g00021 950 Pfam Leucine rich repeat 350 410 IPR001611 GO:0005515
Gabi3302g00021 950 Pfam Leucine rich repeat 500 555 IPR001611 GO:0005515
Gabi3302g00021 950 FunFam Os07g0541700 protein 739 820 - -
Gabi3302g00021 950 SUPERFAMILY L domain-like 300 581 - -
Gabi3302g00021 950 ProSitePatterns Protein kinases ATP-binding region signature. 669 691 IPR017441 GO:0005524
Gabi3302g00021 950 Gene3D Ribonuclease Inhibitor 33 147 IPR032675 -
Gabi3302g00021 950 Gene3D Ribonuclease Inhibitor 148 221 IPR032675 -
Gabi3302g00021 950 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 644 738 - -
Gabi3302g00021 950 Gene3D Phosphorylase Kinase; domain 1 644 738 - -
Gabi3302g00021 950 ProSiteProfiles Protein kinase domain profile. 663 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00021 950 PANTHER LEUCINE RICH REPEAT KINASE 2 244 925 - -
Gabi3302g00021 950 FunFam LRR receptor-like serine/threonine-protein kinase EFR 298 594 - -
Gabi3302g00021 950 Gene3D Transferase(Phosphotransferase) domain 1 739 848 - -
Gabi3302g00021 950 Gene3D Transferase(Phosphotransferase) domain 1 849 926 - -
Gabi3302g00021 950 FunFam Leucine-rich repeat receptor-like protein kinase 31 190 - -
Gabi3302g00021 950 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Gabi3302g00021 950 SUPERFAMILY L domain-like 32 285 - -
Gabi3302g00021 950 SUPERFAMILY Protein kinase-like (PK-like) 639 921 IPR011009 -
Gabi3302g00021 950 ProSiteProfiles Leucine-rich repeat profile. 423 446 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00021 Gabi-Chr3302 257678 260982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00021 28 911 Receptor kinase-like Gene Family AT3G47570 32.692 1.23e-138 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi3302g00021 Pkinase 1.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00021 - - gmx:100815766 1426.38