Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00015 ATGGCTAAGATGTCGCAGAAAAGCCTCAAGAACAATACTTGTGCTAACACCAACAAAAGTAGCACAACCACGTCGAAGGTGAAGCGTGCACGCAAAAGCATCCCAAGAGACACCCCTTCACAACGAAGCTCAATCTATCGTGGTGTTACCAGGCATCGATGGACAGGTCGATATGAGGCTCATTTGTGGGATAAGAATTGCTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGTATATTTAGGGGCATATGATGATGAAGATGCCGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAATTTCCCTTTATCGAATTATCAAGATGAGCTCAAGGAGATGAAGGATCAATCAAAAGAAGAATATATTGGATCCTTAAGAAGAAAAAGTAGCGGGTTCTCTCGAGGAGTCTCAAAATATAGAGGCGTGGCAAGACACCACCACAATGGAAGATGGGAAGCTCGAATTGGCAGAGTCTTCGGCAACAAATATCTATACCTTGGAACTTATGCTACACAAGAAGAAGCAGCAGTGGCATATGATATGGCAGCCATAGAATACCGTGGACTTAATGCGGTTACAAACTTTGACCTTAGTCGTTATATCAAATGGCTACGTCCTAAGACCCGAGACCAAGAAAACAATGAAAACCATAGCGACACTCAACAATGTCCAAACACAAATCCTGAACTTGAACTAGGGTTTGTTTCCCACGAACTCAGCACTACCACTGGTGAGACCACAAATGAAGCTACAAAACAATCTAGTAATGGGACAGGAACATCTTCTTCTGCATTGGGGCTTCTTTTGCAGTCATCAAAATTCAAAGAAATGCTAGAAAGGACTTCAGCTTCAGATTACCCTCCACCGCCTTCAGAGTCAAACCCTCCTCGTCGTACATTCCCAGAAGATATTCAAACATTTTTTGAAAGTCAAGATTCTGGAAGCTACGCTGACAATGATGACATTATATTTGGCGAGTTGACCTCAATTGCTGCTCCAATTTTTCATTGTGAGCTTAATGCTTAG 1053 0.4321 MAKMSQKSLKNNTCANTNKSSTTTSKVKRARKSIPRDTPSQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEDAAARAYDLAALKYWGQDTILNFPLSNYQDELKEMKDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAAVAYDMAAIEYRGLNAVTNFDLSRYIKWLRPKTRDQENNENHSDTQQCPNTNPELELGFVSHELSTTTGETTNEATKQSSNGTGTSSSALGLLLQSSKFKEMLERTSASDYPPPPSESNPPRRTFPEDIQTFFESQDSGSYADNDDIIFGELTSIAAPIFHCELNA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00015 350 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 MobiDBLite consensus disorder prediction 287 309 - -
Gabi3302g00015 350 FunFam AP2-like ethylene-responsive transcription factor 44 113 - -
Gabi3302g00015 350 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 MobiDBLite consensus disorder prediction 1 46 - -
Gabi3302g00015 350 SUPERFAMILY DNA-binding domain 44 113 IPR016177 GO:0003677
Gabi3302g00015 350 FunFam AP2-like ethylene-responsive transcription factor 146 207 - -
Gabi3302g00015 350 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 MobiDBLite consensus disorder prediction 218 238 - -
Gabi3302g00015 350 MobiDBLite consensus disorder prediction 251 272 - -
Gabi3302g00015 350 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Gabi3302g00015 350 MobiDBLite consensus disorder prediction 1 28 - -
Gabi3302g00015 350 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Gabi3302g00015 350 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Gabi3302g00015 350 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Gabi3302g00015 350 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 16 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00015 Gabi-Chr3302 156072 159440 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00015 41 209 AP2-EREBP Transcription Factor Family AT5G57390 75.740 1.23e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Gabi3302g00015 AP2 3.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00015 K09285 - rcu:8280276 485.337