LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3302g00014	ATGAATGGTTCCCAAAAATCCTCAACTTCATGCCAGCCATACAATACTCTCTATTACAATCCCCTCAACGAGTTGAGGCACAGCCGTAGCTGTAGCAGCTACTATGGCCGCATAGCCTCCAAAGGTGACGACGACAAGGAAAATGCCAATGGGTTCTCTTCCAATGACAACAAGGAAAATGTTCTAACCAAAGAAATCCATGACAAGAAGGAAAATGCAAATGGGTCATCTCCCCTGCACAAGCCCTTCTCAAAGTCCAAGTCTTTGTCCGCAGACAGGATTTTGAAGCCCTCTTCTCTCCACTTCTGCATGCAAATGAACGAGCCAGATAGGGGTTTTGGGTCCAAGTTATGGGATCCTCTTGAATCCCACAATTCCAGCTCTTTGAATGTTTGGGATTACTCTGACTCGGAGGCTGCTCCAGCTTCCTCCTGGTCCACATTGCCCAATAAGTCTTTGATCTGTAGACCCTTGCCTATAGATATTGGAAGGTGTACCTGTGTTATTGTGAAGGAAGCCACACCACAAGGACTATCTGGGGGTGCTTTGTTTTCTCTTTATACCTATGAAGGTCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCCACCACAGGCGGCGGAATGGGAGGTCTCAGTTCACCGTAGCTCAGAATGTGAAAGGACTACTTTCCAATTCAGATGATAGTTTTCTTGGGACCGTAACAGCTAACCTTATGGGCTCAAAATACCACATTTGGGATCAGGGATATCGTCGTAAATCCCATAGTAAACAACCAAAACCACCTCTTGCTGTTGTGACGTATATACCTACAATAGCAACATGCACAGGAAGTCACAGAAGCATGAGGGCTTATATACCCAAGCATCAATCTATGTCACTGAAGAACACGACCCAGGTACAACATATTAAAGGACTACCAATGGATTGGGAGCAAAAATTGGACAAAACCCATCAACTATTCTCAAGGGTTCCACTGTACAACAAGAATTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAGGGCAGGACTTAGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTGGAGGAGAATGGGAGGCAGACGATCCTGCAGTTAGGGAGGGTGGGAAAATCAAATTTCGTTATGGACTACAGATATCCTCTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATTCCAAGCTTTGTTGCACAGTGTAA	1224	0.4485	MNGSQKSSTSCQPYNTLYYNPLNELRHSRSCSSYYGRIASKGDDDKENANGFSSNDNKENVLTKEIHDKKENANGSSPLHKPFSKSKSLSADRILKPSSLHFCMQMNEPDRGFGSKLWDPLESHNSSSLNVWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEATPQGLSGGALFSLYTYEGQGRQNRKLAVAHHRRRNGRSQFTVAQNVKGLLSNSDDSFLGTVTANLMGSKYHIWDQGYRRKSHSKQPKPPLAVVTYIPTIATCTGSHRSMRAYIPKHQSMSLKNTTQVQHIKGLPMDWEQKLDKTHQLFSRVPLYNKNSKQFELDFRDKGRAGLRIQRSVKNFQLTLEENGRQTILQLGRVGKSNFVMDYRYPLTGYQAFCICLASIDSKLCCTV	407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3302g00014	407	MobiDBLite	consensus disorder prediction	40	90	-	-
	Gabi3302g00014	407	MobiDBLite	consensus disorder prediction	60	75	-	-
	Gabi3302g00014	407	Pfam	Tub family	156	401	IPR000007	-
	Gabi3302g00014	407	Gene3D	Tubby Protein; Chain A	147	406	IPR025659	-
	Gabi3302g00014	407	SUPERFAMILY	Tubby C-terminal domain-like	142	406	IPR025659	-
	Gabi3302g00014	407	PANTHER	TUBBY-RELATED	53	404	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3302g00014	Gabi-Chr3302	142426	146269	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3302g00014	36	300	TUB Transcription Factor Family	AT1G16070	52.239	1.76e-91	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Gabi3302g00014		Tub	7.2e-43	CL0395

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3302g00014	K19600		-	cave:132188154	569.311