Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00006 ATGGCTCTTGAGACCTCTCAGTCTCAGCAACATGATGAATTCATTTTCAGGTCGAAGCTTCCCGATATCTACATCCCCAAACACCTTCCCCTTCACTCTTATTGCTTTGAGAATCTTTCCGAGTTTGGATCACGGCCTTGTCTTATCAATGCCCCAACCGGTGTGGTCTTCACCTACCACGACGTAGAACTCACCGCACGTAAAGTTGCCTCAGGTCTCATCAAATTGGGAATTCAACAAGGTGAAGTGATCATGATTCTGCTTCCCAATTCCCCTGAATTTGTGTTCACCTTTCTCGGCGCTTCTTATCGCGGTGCCATGGCAACCGCTGCTAACCCATTCTTCACAGCATCTGAGATTGCAAAGCAAGCAAAGGCTTCCAATGCCAAGTTGCTCATAACCCAATCCAGTTACTACGAGAAAGTTAAGGACTTGGATGTGAAGGTTGTGATGGTGGACTCTCCCCAAGAAGAAGGGTGTATGCATTTCTCAGAATTGAGCGACGCGGACGAGAATGAATTGGAATTAGCAGAGGTTAAGATAAAAGGTGATGATGCGGTGGCATTGCCGTATTCGTCGGGGACGACAGGTATGCCGAAAGGGGTGATGTTAACACACAAAGGTTTAGTTACGAGCATAGGACAACAAGTGGATGGGGACAATCCAAACCTCTATTACAACTCCGAGGATGTTATATTGTGTGTTCTTCCACTCTTTCATATATACTCTCTCAACTCTGTTTTACTATGCGGTTTGAGAGCAAAGGCTGCTATTCTCCTCATGCCTAAGTTCGACGTTAATGCATTGCTCTCTCTCGTTCAGAAACACAAAATCACTATTGCCCCTGTCGTTCCTCCTATTGTTTTGGCCATTGCTAAGTCACCCGATCTTTCTAACTATGACCTTTCTTCGATTCGGGTGTTGAAATCTGGTGGAGCTCCTCTCGGTAAAGAACTCGAAGACACTCTCAGGGCCAAATTCCCTAACGCCAGACTTGGACAGGGATATGGAATGACAGAGGCAGGACCAGTGCTAACAATGAGCTTAGCATTTGCTAAAGAACCGATGGATGTAAAACCAGGTGCATGTGGAACAGTTGTGAGAAATGCAGAGATGAAGATTGTGGATCCTGAAACTGGTCATTCTTTGCCTCGAAACCAATCCGGTGAAATTTGCATAAGAGGCGACCAGATCATGAAAGGTTATCTAAATGATGAAGAGGCTACGGAGAGAACCATAGACAAAGAGGGTTGGTTGCATACAGGTGACATAGGTTACATCGACGATGACGATGAGTTATTCATCGTTGATAGGCTGAAGGAATTGATCAAATACAAAGGATTTCAGGTTGCTCCAGCTGAACTTGAAGCCCTTCTTCTCACCCATCCTAAGATTTCTGATGCTGCTGTCGTTCCAATGAAGGATGAAGCGGCTGGAGAGGTACCTGTTGCATTTGTAGTGAGATCAAACGGTTACACAGACACAACCGAGGATGAGATTAAACAGTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAATCACCATCAGGAAAAATCCTGCGTAAGGATCTAAGAGCAAAGCTAGCAGCAGGTGTTCCAAACTGA 1641 0.4491 MALETSQSQQHDEFIFRSKLPDIYIPKHLPLHSYCFENLSEFGSRPCLINAPTGVVFTYHDVELTARKVASGLIKLGIQQGEVIMILLPNSPEFVFTFLGASYRGAMATAANPFFTASEIAKQAKASNAKLLITQSSYYEKVKDLDVKVVMVDSPQEEGCMHFSELSDADENELELAEVKIKGDDAVALPYSSGTTGMPKGVMLTHKGLVTSIGQQVDGDNPNLYYNSEDVILCVLPLFHIYSLNSVLLCGLRAKAAILLMPKFDVNALLSLVQKHKITIAPVVPPIVLAIAKSPDLSNYDLSSIRVLKSGGAPLGKELEDTLRAKFPNARLGQGYGMTEAGPVLTMSLAFAKEPMDVKPGACGTVVRNAEMKIVDPETGHSLPRNQSGEICIRGDQIMKGYLNDEEATERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVRSNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVPN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00006 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 11 538 - -
Gabi3302g00006 546 Gene3D - 440 542 IPR045851 -
Gabi3302g00006 546 Pfam AMP-binding enzyme 40 445 IPR000873 -
Gabi3302g00006 546 CDD 4CL 25 536 - -
Gabi3302g00006 546 FunFam 4-coumarate--CoA ligase 2 441 543 - -
Gabi3302g00006 546 Pfam AMP-binding enzyme C-terminal domain 454 530 IPR025110 -
Gabi3302g00006 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 17 440 - -
Gabi3302g00006 546 SUPERFAMILY Acetyl-CoA synthetase-like 13 542 - -
Gabi3302g00006 546 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Gabi3302g00006 546 Gene3D - 8 439 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00006 Gabi-Chr3302 76040 81861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00006 3 508 Monolignol Biosynthesis Gene Families AT1G51680 68.544 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00006 K01904 - gmx:547944 898.656