Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00004 ATGAGACCGACTCAATCGCCGCCGCCAACGCCGCCATCCTCATCTAACCCTAAGTCCCACTCCCACCGCCGCGGCATAGACCTGACCTTGCCGTTGCCGTTACCGGTGCCGGACCGAGCCACATCAACATCATCATCCTTTGGACCGCCCCTTCCCCTTCCCCTTCCCCCTCCCCCTTCTACCCTCACCGTCCCCTTCTCCGAGCTCGACCGCCTCAACCGAATCGGCAGCGGATGCGGTGGCACCGTCTACAAGGTCCTCCACCGAACCACCGGCCGCGTGTACGCTCTCAAGGTTATAATCGGCAATCACGAGGAATCGGTCAGGCCGCAGATCCACCGGGAAATCCAGATCCTCCGGGACGTGGATGACCGGAACGTGGTGAAGTGCCACGACATGTACGACGAGAACGGGCAAATCCAGTTGCTGCTAGAGTTCATGGACGGAGGGTCCCTGGAAGGGAAACACATCCCCGACGAGAAACAACTCTCGGATGTGGCAGGTCAGATTCTCCGGGGAGTGGCGTACCTCCACCGGCGGCACATCGTCCACCGGGACATAAAGCCGTCGAACCTTCTTATAAACTCGAGGAAGGAGGTGAAGATAGCAGACTTCGGGGTGGGACGTATGCTGAAAGAAACGATAGAACCTTGCAATTCATCGGTGGGTACGATAGCATACATGAGCCCGGAGAGGATAAACACGGAGAAGAATGAGGGGCGTTACAACGCGTACGCAGGGGATATATGGAGCTTTGGTGTGAGCATATTGGAGTTTTATATGGGAAGGTTTCCATTTGGAAAGCATGGAGATTGGGTGAGCTTGATGTGTGCCATATGTATGTCTCAGCCCCCTCAGGCCCCCCCTACTGCTTCCCTCCATTTCAGGGATTTCGTGTCTCGCTGTTTGCACAGAGATCCCTCCCGCAGGTGGACTGCCTCTGCCCTCTTGGCCCACCCTTTTATTGTTCTTTCTTCCTAA 981 0.5647 MRPTQSPPPTPPSSSNPKSHSHRRGIDLTLPLPLPVPDRATSTSSSFGPPLPLPLPPPPSTLTVPFSELDRLNRIGSGCGGTVYKVLHRTTGRVYALKVIIGNHEESVRPQIHREIQILRDVDDRNVVKCHDMYDENGQIQLLLEFMDGGSLEGKHIPDEKQLSDVAGQILRGVAYLHRRHIVHRDIKPSNLLINSRKEVKIADFGVGRMLKETIEPCNSSVGTIAYMSPERINTEKNEGRYNAYAGDIWSFGVSILEFYMGRFPFGKHGDWVSLMCAICMSQPPQAPPTASLHFRDFVSRCLHRDPSRRWTASALLAHPFIVLSS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00004 326 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3302g00004 326 Pfam Protein kinase domain 71 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00004 326 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 35 323 - -
Gabi3302g00004 326 Gene3D Phosphorylase Kinase; domain 1 60 148 - -
Gabi3302g00004 326 Gene3D Transferase(Phosphotransferase) domain 1 150 326 - -
Gabi3302g00004 326 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Gabi3302g00004 326 ProSiteProfiles Protein kinase domain profile. 69 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00004 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Gabi3302g00004 326 CDD PKc_MAPKK_plant_like 67 322 - -
Gabi3302g00004 326 MobiDBLite consensus disorder prediction 1 59 - -
Gabi3302g00004 326 SUPERFAMILY Protein kinase-like (PK-like) 49 322 IPR011009 -
Gabi3302g00004 326 FunFam Mitogen-activated protein kinase 2 149 326 - -
Gabi3302g00004 326 SMART serkin_6 69 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00004 Gabi-Chr3302 43714 45274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00004 1 326 MAP Kinase Kinase Gene Family AT1G51660 60.286 3.51e-141 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gabi3302g00004 Pkinase 4.1e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00004 K13413 - gmx:100818488 459.144