Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3302g00001 ATGAGACTTGTCTGGTGGCTTCTTTTCTTCTGTTGGTTCTTGCATGCTGTTTCTGCACTCACCTCTGATGGGGTGACTCTCTTGTCACTCTTGAAGCACTGGACATTCGTGCCTCCTTCCATTAACTCCACCTGGGTTGCATCTGATTCAACTCCATGCTCATGGGTTGGAGTTCAATGTGACCATCATGCCCACCATGTGGTTTACCTTAACCTCACTGGTTATGAGGTTGCTGGTCAATTAGGACCTGAAATTGGAAATTTTAGTCGCCTGGAGTACTTGGATCTTACTAATAATAGCCTCAGTGGCCAAATACCTGTAACCTTGAATAACTTGCACAAACTCAAGTTTATCAGCCTCGGTGGTAATCTACTCACTGGTGAAATTCCAGATTCCTTCACTCAAATCCCTCAACTACAATTTGCTGATCTGTCTTATAACAGTCTAAGTGGTTCCATCCCCACAAGTATTGTGAACATGACTGGGCTCTTGCAGTTGTATCTTCAGAGTAACCTTTTGTCTGGGACAATTCCCTCATCCATTGGGAACTGCAGTAAATTACAAGAGTTGTTTTTTGATGGAAATCAGTTGCAGGGTATCCTTCCTGAGAGTCTAAACAATCTTAAAGATCTTGTTTATTTTGATGTCAGCCGCAATAGTCTTAGGGGTACCATTCCATTGGGTTCTGGCGGTTGTAAAAATTTACAATTTTTGGATCTCTCATACAATGTGTTTAGTGGAGGCATTCCTTCAGGCTTGGGGAATTGTAGTGGTTTATCACAAGTTGCTGCTGTGAACTCTAACTTAGTTGGAAGTATTCCATCCTCCTTTGGTCTACTCACCGAGCTTTCTATTCTATACCTTCCTGAGAACCATTTATCAGGAAAAATTCCTCCAGAACTTGGTAACTGCAAGTCTTTGAATGAGTTACACTTGTATTCCAATCGACTCGAGGGAAAGATTCCAAGTGAACTGGGAAAACTGAGTGAACTACAGGACCTTGAATTGTTTTCAAATCAATTGACAGGTGAAATTCCACTCAGCATCTGGAAGATTCAAGGTCTCGAGCATCTCCTTGTATATAATAATAGCCTATTTGGAGAATTGCCTCTGGAGATGACAGAGCTCAAACAACTGAAAAATATCTCATTGTTTAACAACCAGTTCTCTGGAGTAATACCTCAAAGCTTGGGGATTAATAGCAGTTTAGTACAGTTGGACTTTACAAATAATAAGTTCACTGGTAACATCCCCACAAATCTTTGTTTTGGCAACAAGTTAAGCATACTGAATATGGGCATCAATCAACTTCAAGGTAGCATACCTCCTGATGTTGGAAGCTGTACAACTCTTAGAAGGGTGATTCTTAAACAAAATACTCTTACTGGACCTCTTCCTGATTTTGACAGCAATCCGAATCTCACTTTCATGGATATCAGCAACAACAAAATCAATGGAGCAATTCCCTCAAGTTTGGGAAACTGCAGAAATCTCACTGACTTAATTTTGTCCAATAACAAATTTACAGGGTTTATACCCTCGGAGCTAGGAAACCTTGTGAATCTTCGGACTTTGAATCTTGCTCACAACAACTTAGAAGGTCCTTTGCCATCTCAGCTGTCAAACTGTACCAAAATGGACAAGTTTGTTGTGGGATTTAATTTCCTAAATGGTTCACTGCCATCAAGTCTGCGGAGCTGGACAGTGCTAAACACATTAATTTTAAGTGAGAATCATTTTAGTGGGGGCATCCCTTCTTTCTTGTTGGAGTTTAAAAAGCTTTCTGAATTACAACTTGGTGGAAATATGTTTGGAGGCAGAATTCCTGGATCAGTTGGAGCATTGCAGAATTTGATCTATGGGTTGAATCTAAGTTCCAATGGGCTGATAGGTGACCTTCCTGTAGAGATTGCAAACCTGAAAAAATTGCAAACACTGGATCTATCTCAGAACAATTTGACAGGAAGCATACAAGTTCTTGATGAACTCCCTTCATTAGTTGAAGTCAATATTTCATACAATTCTTTTCATGGTCCTGTACCACAGATGCTAATGAAGTTGCTTGATTCTCCCTTGTCATCATTTTTGGGTAATCCTGGCCTGTGTATCAGTTGTTCACCATCAGATGCGGTTTGCCCTCAAAGCAGCTATCTGAAACCGTGTGATAACGAATCAACTAATCGGAGGCGCCTGAGTAAGGTTGAAATTGTGATTATAGCACTGGGATCCTCAATATTTGTTGTTTTGCTGTTGCTGGGATTAGTTTATGTTTTTGTTTTTGGCAAAAAATTTAAGCAGGAAGCCCAAATCTCTGCTAACGAGGGTCCTTCATCCCTTCTTAACAAAGTCATGGAGGCTACAGCAAACCTAAATGATCAGTTTATCATTGGCAGAGGAGCACATGGAGTTGTTTATAAAGCACTGATAGGTCCAGACAAAGCTTTTGCTGTAAAGAAGCTTGGATTTGCTGCTAGCAAAGGTAAGAACTTGAGCATGGTCAGAGAAATTCAAACCCTTGGACAAATTAGGCATAGAAATCTGGTCAAATTGGAAGACTTTTGGTTGAGAAAAGATTATGGTCTGATTTTGTACAGCTACATGCCAAATGGAAGCCTTCATGATGTTTTGCATGAAAAGAATCCACCATCATCCTTAGAGTGGAATGTCCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGTCTTATCTGCATTATGACTGTGATCCTCCCATAGTCCACCGAGACATCAAACCAAACAATATACTTCTTGACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCTACTTCAAATCCTTCCATATCTGTGCCGGGTACAATTGGTTACATTGCACCAGAGAATGCTTATGCAACAAGAAGTGGTAGGGAGTCTGATGTGTACAGTTACGGTGTAGTTTTGCTTGAGCTGATAACTAGAAAGAAGCCACTAGACCCCTCATTTATGGAGGGCACTGATGTAGTTGGTTGGGTTAGATCTGTGTGGGGGGAAACGGGTGATATCTACCAAATTGTTGATTCAAACCTTGCTGAGGAATTTCTAGATACCCATATAATGGAAAAAGTTACACAAGTGCTTATGGTGGCTTTGAGATGTGCTGAGAAGGATCCACACAAGAGACCCACTATGAGAGATGTTACCCACCAATTATCACATGCTACTGCTAGTACTAATTCACGGACAACAAATAGTAGAAAACGCTAG 3252 0.4065 MRLVWWLLFFCWFLHAVSALTSDGVTLLSLLKHWTFVPPSINSTWVASDSTPCSWVGVQCDHHAHHVVYLNLTGYEVAGQLGPEIGNFSRLEYLDLTNNSLSGQIPVTLNNLHKLKFISLGGNLLTGEIPDSFTQIPQLQFADLSYNSLSGSIPTSIVNMTGLLQLYLQSNLLSGTIPSSIGNCSKLQELFFDGNQLQGILPESLNNLKDLVYFDVSRNSLRGTIPLGSGGCKNLQFLDLSYNVFSGGIPSGLGNCSGLSQVAAVNSNLVGSIPSSFGLLTELSILYLPENHLSGKIPPELGNCKSLNELHLYSNRLEGKIPSELGKLSELQDLELFSNQLTGEIPLSIWKIQGLEHLLVYNNSLFGELPLEMTELKQLKNISLFNNQFSGVIPQSLGINSSLVQLDFTNNKFTGNIPTNLCFGNKLSILNMGINQLQGSIPPDVGSCTTLRRVILKQNTLTGPLPDFDSNPNLTFMDISNNKINGAIPSSLGNCRNLTDLILSNNKFTGFIPSELGNLVNLRTLNLAHNNLEGPLPSQLSNCTKMDKFVVGFNFLNGSLPSSLRSWTVLNTLILSENHFSGGIPSFLLEFKKLSELQLGGNMFGGRIPGSVGALQNLIYGLNLSSNGLIGDLPVEIANLKKLQTLDLSQNNLTGSIQVLDELPSLVEVNISYNSFHGPVPQMLMKLLDSPLSSFLGNPGLCISCSPSDAVCPQSSYLKPCDNESTNRRRLSKVEIVIIALGSSIFVVLLLLGLVYVFVFGKKFKQEAQISANEGPSSLLNKVMEATANLNDQFIIGRGAHGVVYKALIGPDKAFAVKKLGFAASKGKNLSMVREIQTLGQIRHRNLVKLEDFWLRKDYGLILYSYMPNGSLHDVLHEKNPPSSLEWNVRYKIAVGIAHGLSYLHYDCDPPIVHRDIKPNNILLDSDMEPHIADFGIAKLLDQSSTSNPSISVPGTIGYIAPENAYATRSGRESDVYSYGVVLLELITRKKPLDPSFMEGTDVVGWVRSVWGETGDIYQIVDSNLAEEFLDTHIMEKVTQVLMVALRCAEKDPHKRPTMRDVTHQLSHATASTNSRTTNSRKR 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3302g00001 1083 SMART LRR_typ_2 519 543 IPR003591 -
Gabi3302g00001 1083 SMART LRR_typ_2 185 207 IPR003591 -
Gabi3302g00001 1083 SMART LRR_typ_2 280 304 IPR003591 -
Gabi3302g00001 1083 SMART LRR_typ_2 88 112 IPR003591 -
Gabi3302g00001 1083 SMART LRR_typ_2 640 670 IPR003591 -
Gabi3302g00001 1083 SMART LRR_typ_2 160 184 IPR003591 -
Gabi3302g00001 1083 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 324 1067 - -
Gabi3302g00001 1083 SUPERFAMILY RNI-like 70 414 - -
Gabi3302g00001 1083 FunFam Serine/threonine-protein kinase-like protein CCR4 867 1083 - -
Gabi3302g00001 1083 Gene3D Ribonuclease Inhibitor 20 171 IPR032675 -
Gabi3302g00001 1083 Gene3D Ribonuclease Inhibitor 265 365 IPR032675 -
Gabi3302g00001 1083 FunFam Leucine-rich repeat receptor protein kinase EMS1 227 307 - -
Gabi3302g00001 1083 MobiDBLite consensus disorder prediction 1053 1083 - -
Gabi3302g00001 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 912 924 IPR008271 GO:0004672|GO:0006468
Gabi3302g00001 1083 ProSiteProfiles Protein kinase domain profile. 790 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00001 1083 FunFam Leucine-rich repeat receptor-like kinase 24 129 - -
Gabi3302g00001 1083 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 425 711 - -
Gabi3302g00001 1083 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Gabi3302g00001 1083 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 308 397 - -
Gabi3302g00001 1083 Gene3D Ribonuclease Inhibitor 172 264 IPR032675 -
Gabi3302g00001 1083 MobiDBLite consensus disorder prediction 1063 1077 - -
Gabi3302g00001 1083 ProSitePatterns Protein kinases ATP-binding region signature. 796 819 IPR017441 GO:0005524
Gabi3302g00001 1083 SMART LRR_sd22_2 640 662 - -
Gabi3302g00001 1083 SMART LRR_sd22_2 88 114 - -
Gabi3302g00001 1083 SMART LRR_sd22_2 328 357 - -
Gabi3302g00001 1083 SMART LRR_sd22_2 519 545 - -
Gabi3302g00001 1083 SMART LRR_sd22_2 184 210 - -
Gabi3302g00001 1083 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 758 866 - -
Gabi3302g00001 1083 Pfam Leucine rich repeat 89 149 IPR001611 GO:0005515
Gabi3302g00001 1083 Pfam Leucine rich repeat 472 532 IPR001611 GO:0005515
Gabi3302g00001 1083 Pfam Leucine rich repeat 186 243 IPR001611 GO:0005515
Gabi3302g00001 1083 ProSiteProfiles Leucine-rich repeat profile. 642 664 IPR001611 GO:0005515
Gabi3302g00001 1083 Gene3D Ribonuclease Inhibitor 366 426 IPR032675 -
Gabi3302g00001 1083 Gene3D Phosphorylase Kinase; domain 1 760 866 - -
Gabi3302g00001 1083 PRINTS Leucine-rich repeat signature 91 104 - -
Gabi3302g00001 1083 PRINTS Leucine-rich repeat signature 640 653 - -
Gabi3302g00001 1083 FunFam Leucine-rich receptor-like protein kinase family protein 130 226 - -
Gabi3302g00001 1083 SUPERFAMILY Protein kinase-like (PK-like) 780 1066 IPR011009 -
Gabi3302g00001 1083 Gene3D Ribonuclease Inhibitor 427 728 IPR032675 -
Gabi3302g00001 1083 Pfam Protein kinase domain 795 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00001 1083 SMART serkin_6 790 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3302g00001 1083 SUPERFAMILY RNI-like 346 697 - -
Gabi3302g00001 1083 Gene3D Transferase(Phosphotransferase) domain 1 867 1083 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3302g00001 Gabi-Chr3302 26280 29677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3302g00001 16 1082 Receptor kinase-like Gene Family AT1G73080 53.037 0.0 1058
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi3302g00001 Pkinase 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3302g00001 - - gmx:100778035 1653.65