Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3301g00007 ATGAAAAAATCAACTAGATGTGCTGGCTGCAAATATTTGAGGAGAAGATGTCCCCCAGATTGTGTTCTAAAGCCATATTTTCCCTCAACCAATCCTCAGAGATTCTCATTTGCTCATAAAGTCTATGGTGCCAGCAATATTACCAGAATTCTAACGAGACTTCAGGAGCATTTACGAGCCAAGGCTGCGGATAGCATGTGTTATGAAGCGAATATACGTGTTAAGGATCCTGTTTATGGGTGCGTTGGAGAAATCAATCGATTGCAACAACAGATAATTCAAGGTCAAAATGAGATAAAAAGGATCAAGGATGAAATGGCATTTCAAAATGCACTGAGACAACAACCGCTGCAGTATCAGCAGCAAATGGTTCAGGCTAATGTTAAAGATGAAGCATTTTCATATGCAAGTTCAATTGAACAGCAACTCAACCTCAGCATATCTCAGCAGCCTTTTGATGCGTCCACTTTTGCTTGTTTTCCATGA 486 0.4012 MKKSTRCAGCKYLRRRCPPDCVLKPYFPSTNPQRFSFAHKVYGASNITRILTRLQEHLRAKAADSMCYEANIRVKDPVYGCVGEINRLQQQIIQGQNEIKRIKDEMAFQNALRQQPLQYQQQMVQANVKDEAFSYASSIEQQLNLSISQQPFDASTFACFP 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3301g00007 161 Coils Coil 85 105 - -
Gabi3301g00007 161 Pfam Lateral organ boundaries (LOB) domain 6 102 IPR004883 -
Gabi3301g00007 161 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Gabi3301g00007 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3301g00007 Gabi-Chr3301 122552 123240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3301g00007 6 107 AS2 family AT3G26660 53.922 1.64e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi3301g00007 LOB 5.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3301g00007 - - qsu:112005702 154.836