Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3301g00001 ATGGACTACAGTGAAGATTATGTATCAAATGAGCATCGTGAGCTTCATCAAACTGTAGCAGAAAGTGCAGATCCATTATCTGTTTCTCCATTGCATCTTTCACCAAGGTCTCCTAAATCTCCAAAGTCCCCGAAGGTACAAGGCAAGTGTAGCAGTCCAAGTCCAAAGAATAATAGACAATCACATTCTCCAAAAGATGGACGTCCAAAGAAAGGTGGCTCTGGGGGGAAAGGTACCTGGGGTGGATTGCTTGACACAGATGACATGAACGTTGTTGATCCCGCTGACCCAAACTATGACAGCAGTGAGGAATATGGCAATTCAAATGAAAATAAAAGGACAACCGAACTGCTGGACTACAAGAAAAAAGCTACAATAATAGTGGAGGAATACTTTGCCACTGATGATGTTGTTGCAACAATAAATGAACTTAGAGAGCTTGGAAAACCAGAGTATAGCTACTATTTTGTCAAAAAACTTGTCTCTATTTCAATGGACAGAGATGACAAGGAAAAAGAAATGGCTGCTATTCTGTTATCTGCACTTTATGGTGACCTATTTCATCCTACACAAGTTTACAAAGGCTTCAGCAAATTAGTTGAATCAGCAGATGACTTAATTGTAGATATACCGGACACAGTTGATGTTCTTGCGCTTTTCTTAGCCCGAGCCGTGGTTGATGACATACTTCCTCCTGCATTTTTGAAGAAACAGATGGCCTACTTACCTAAAGATTCAAAAGGGGTTGAGGTTTTGAAAAAAGCTGAGAAAAGCTATCTAGCTGCACCTCTACATGCTGAAATCATAGAAAGGCGTTGGGGAGGTAGTAAGAATACAACAGTTGATGAAGTGAAGGCTAGGATAAACAATTTTTTGAAGGAGTATGTAGTAAGTGGTGACAAGAAAGAAGTTTTTAGGTGCATTAAAGATTTGAAAGTTCCTTTTTTCCACCATGAAATAGTGAAAAGGGCTCTTATAATGGCAATGGAAAGGCGTCAAGCTGAACCACCACTACTAGACTTGTTGAAGGAGGCAGCTGAAGAGGGTTTCATCAACTCTAGCCAAATGTCTAAAGGGTTTGATAGGTTGATTGACACAGTTGATGACTTATCACTTGACATACCGAATGCGCGTGGAATCTTGCAGCAACTAATGTCTAAAGCAGCATCTGAGGGTTGGTTGTGTGTGTCATCTTTGAAATCACTTTCAGTTGAGCCTGAAAAGAACACAATAAAAGATAATGCTGCAAGAAGTTTCAAGATAAAGACTCAGTCAATCATTAAAGAGTACTTCTTATCAGGTGATGTATTGGAGGTAAGTAGTTGTCTAGAACAAGAGAACAGCAACAACTGTGGTGAACTCAATGCAATCTTTGTTAAGAAGCTGATAACTCTTGCAATGGATAGGAAGAATAGGGAGAAGGAAATGGCATCTGTGTTGCTTTCATCTTTGTGTTTCCCAGCTGATGATGTTGTGAGTGGTTTTGTGATGTTAATTGAATCAGCAGATGACACTGCTCTTGATAATCCTGTTGTTGTTGAGGATCTAGCTATGTTTCTTGCTAGAGCAGTAGTTGATGAAGTCCTAGCTCCACAACACCTTGAAGAGATTGGAACACAATGTTTGGGGCCAGATTCGATTGGGAACAAAGTGCTTCAAATGGCTAAGTCATTGCTAAAGGCTAGACTCGCCGGGGAGCGAATTTTGAGGTGTTGGGGTGGTGGTGGAAGCAGCAGGCCTGGATGGGCAGTTGAAGATGTCAAAGACATGATTGGGAAGCTGTTGGAGGAATATGAATCTGGTGGTGACATAAGAGAGGCTTGTCGCTGCATGAAAGAGTTAGGAATGCCATTTTTCCATCATGAAGTTGTTAAGAAAGCTTTGGTGACAATAATTGAAAAGAAGAATGAGAGGTTATGGGGTCTACTAAAGGAGTGTTTTGATTCAGGACTAATAACCATGTATCAAATGGTCAAAGGTTTTGGAAGGGTAGCTGAATCTCTTGACGACTTGGCTTTGGATGTTCCTGATGCTAAGAATCAGTTTGCACACTACGTTGAAAGAGCAAAAACTGAAGGATGGTTGGACAACTCATTTTGTTTCAGCAAACTGGAACATGCAACAGAGAATGGCACTTGCTAA 2142 0.4076 MDYSEDYVSNEHRELHQTVAESADPLSVSPLHLSPRSPKSPKSPKVQGKCSSPSPKNNRQSHSPKDGRPKKGGSGGKGTWGGLLDTDDMNVVDPADPNYDSSEEYGNSNENKRTTELLDYKKKATIIVEEYFATDDVVATINELRELGKPEYSYYFVKKLVSISMDRDDKEKEMAAILLSALYGDLFHPTQVYKGFSKLVESADDLIVDIPDTVDVLALFLARAVVDDILPPAFLKKQMAYLPKDSKGVEVLKKAEKSYLAAPLHAEIIERRWGGSKNTTVDEVKARINNFLKEYVVSGDKKEVFRCIKDLKVPFFHHEIVKRALIMAMERRQAEPPLLDLLKEAAEEGFINSSQMSKGFDRLIDTVDDLSLDIPNARGILQQLMSKAASEGWLCVSSLKSLSVEPEKNTIKDNAARSFKIKTQSIIKEYFLSGDVLEVSSCLEQENSNNCGELNAIFVKKLITLAMDRKNREKEMASVLLSSLCFPADDVVSGFVMLIESADDTALDNPVVVEDLAMFLARAVVDEVLAPQHLEEIGTQCLGPDSIGNKVLQMAKSLLKARLAGERILRCWGGGGSSRPGWAVEDVKDMIGKLLEEYESGGDIREACRCMKELGMPFFHHEVVKKALVTIIEKKNERLWGLLKECFDSGLITMYQMVKGFGRVAESLDDLALDVPDAKNQFAHYVERAKTEGWLDNSFCFSKLEHATENGTC 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3301g00001 713 MobiDBLite consensus disorder prediction 1 111 - -
Gabi3301g00001 713 FunFam programmed cell death protein 4 408 563 - -
Gabi3301g00001 713 FunFam programmed cell death protein 4 109 262 - -
Gabi3301g00001 713 Pfam MA3 domain 420 529 IPR003891 -
Gabi3301g00001 713 Pfam MA3 domain 588 696 IPR003891 -
Gabi3301g00001 713 Pfam MA3 domain 121 231 IPR003891 -
Gabi3301g00001 713 Pfam MA3 domain 285 394 IPR003891 -
Gabi3301g00001 713 Gene3D - 570 702 - -
Gabi3301g00001 713 Gene3D - 270 402 - -
Gabi3301g00001 713 ProSiteProfiles MI domain profile. 283 404 IPR003891 -
Gabi3301g00001 713 Gene3D - 107 260 - -
Gabi3301g00001 713 Gene3D - 409 562 - -
Gabi3301g00001 713 ProSiteProfiles MI domain profile. 586 705 IPR003891 -
Gabi3301g00001 713 MobiDBLite consensus disorder prediction 1 19 - -
Gabi3301g00001 713 SMART ma3_7 120 231 IPR003891 -
Gabi3301g00001 713 SMART ma3_7 587 696 IPR003891 -
Gabi3301g00001 713 SMART ma3_7 284 395 IPR003891 -
Gabi3301g00001 713 SMART ma3_7 419 530 IPR003891 -
Gabi3301g00001 713 ProSiteProfiles MI domain profile. 119 240 IPR003891 -
Gabi3301g00001 713 SUPERFAMILY ARM repeat 417 576 IPR016024 -
Gabi3301g00001 713 SUPERFAMILY ARM repeat 280 400 IPR016024 -
Gabi3301g00001 713 ProSiteProfiles MI domain profile. 418 539 IPR003891 -
Gabi3301g00001 713 SUPERFAMILY ARM repeat 119 277 IPR016024 -
Gabi3301g00001 713 MobiDBLite consensus disorder prediction 33 60 - -
Gabi3301g00001 713 PANTHER PROGRAMMED CELL DEATH 4 15 699 IPR039778 GO:0045892
Gabi3301g00001 713 SUPERFAMILY ARM repeat 583 702 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3301g00001 Gabi-Chr3301 5823 8966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3301g00001 578 696 Eukaryotic Initiation Factors Gene Family AT5G57870 31.148 5.51e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3301g00001 - - gmx:102668745 1188.71