Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3298g00002 ATGGCACAAGGATCACCATCTTCTCCTTTTACCTACACATTCACTTATGATGTCTTTCTTAATTTTCGTGGTGAAGATACACGCACTGGTTTTACTGGCAATCTTTATAGTGCTTTGAGTCAAAGAGGAGTCTTAACCTTCATAGATGATGATGGTCTCAAAAAAGGGGAAGAGATTACACCTTCTCTACTCCATGCAATACAAAAGTCCAGGATGGCTATAGTTATTTTCTCTAAAAACTATGCATCCTCAACGTTTTGTTTGAAAGAACTTGTCCAGATCCTTGAGTGTTATACAAAACAAAACATGTCGATTTTGCCAGTTTTCTATGATGTAGACCCATCTGAAGTTCGACATCAAACGGGAAGTTATGGAGAAGCTTTCGCAAAGCATGAACAGGGAAGATTCAAGGATGACAAAGAGAAGTTGCAAAAATGGAGGTTGGCTTTGAGTCAAGCAGCTGGATTGTCCGGTTGGCATTTCAAACATGGGAAGAAACTTTACCATGATTTTGATGCATTTAATTTCATATTTAAGAATGACGGGGGAGAATATGAGCATGTGTTCATTAAAAATATCATAGAAAAGGTCTCCCTCAAGCTCAATCGACCTCTCTTACATATTGCTAATTATCCTGTTGGATTGAAAGCTCGGATACAACATGTATGGTCGCTTATAGGCACTGAATTTAATAATAAAGTCACCATGATTGGGATTCATGGGATTGGTGGAATAGGAAAATCAATTATTGCGCGTGATATTTATAATTCAGTAGCACATCAATTTGAAGGTTCGTGTTTTCTTGCCAATGTTAGAGAAAAGTCAAATAGGCATGGCCTGGAGCAGATCCAACAGATCTTACTTTCTGAAGTAATTGGGGAGAGAAATATCAATTGGGGAGATGTGAATCAAGGAATTCCAATATTGAAAGAAAGGCTTCATAGGGAAAAAGTCCTACTTATTCTTGATGATGTTGACAAAAAGGAACAATTACAGGCAGTTGCTGGAGGACTTGATTGGTTTGGTTCTGGCAGCATTATCGTCATAACAACAAGGGATAAGCATTTATTAGAATTTCATGGAATTAAAAAACTATATGAGGTTAATGAATTCAATGATACTGAAGCTCTTGAATTATTTAGGTGGAATGCTTTGCAAAGTAAAGAACTTGATGCAAGTTACATGGAAATCATAAAGCGTGCAATATATTATGCCAATGGCCTTCCATTAGCTTTGGAAACAATAGGTTCAAACTTGTTTGGTAAAAAATTAGATGAATGGAAATCTGCACTTGAAGCCTATGAAAGAATTCCAAATAGAGATATTCAGGAAATTCTTAAAGTTAGCTACAATGGCTTGGAGGAGAATGAGAAGGAAATTTTTCTTGACATGGCTTGCTTCTTCAGAGGATGCACTGTGCGATATGTTACAAACATGCTACATGCTCGTGGTTTTCACCCAAAATATGGTATTGAGGTGCTGCAAAAAAAATCTCTCATTAAGTTTATGAGATCGATTGATGATGATGAGATTGTGACAATGCACGACTTGATTCAATATATATGGGAAAAGAAATAG 1578 0.3663 MAQGSPSSPFTYTFTYDVFLNFRGEDTRTGFTGNLYSALSQRGVLTFIDDDGLKKGEEITPSLLHAIQKSRMAIVIFSKNYASSTFCLKELVQILECYTKQNMSILPVFYDVDPSEVRHQTGSYGEAFAKHEQGRFKDDKEKLQKWRLALSQAAGLSGWHFKHGKKLYHDFDAFNFIFKNDGGEYEHVFIKNIIEKVSLKLNRPLLHIANYPVGLKARIQHVWSLIGTEFNNKVTMIGIHGIGGIGKSIIARDIYNSVAHQFEGSCFLANVREKSNRHGLEQIQQILLSEVIGERNINWGDVNQGIPILKERLHREKVLLILDDVDKKEQLQAVAGGLDWFGSGSIIVITTRDKHLLEFHGIKKLYEVNEFNDTEALELFRWNALQSKELDASYMEIIKRAIYYANGLPLALETIGSNLFGKKLDEWKSALEAYERIPNRDIQEILKVSYNGLEENEKEIFLDMACFFRGCTVRYVTNMLHARGFHPKYGIEVLQKKSLIKFMRSIDDDEIVTMHDLIQYIWEKK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3298g00002 525 Gene3D - 14 202 IPR035897 -
Gabi3298g00002 525 Pfam TIR domain 16 201 IPR000157 GO:0007165
Gabi3298g00002 525 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 519 IPR044974 GO:0006952
Gabi3298g00002 525 SMART till_3 15 156 IPR000157 GO:0007165
Gabi3298g00002 525 FunFam Disease resistance protein (TIR-NBS-LRR class) 12 180 - -
Gabi3298g00002 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 463 IPR027417 -
Gabi3298g00002 525 ProSiteProfiles TIR domain profile. 14 197 IPR000157 GO:0007165
Gabi3298g00002 525 Gene3D - 203 363 IPR027417 -
Gabi3298g00002 525 Pfam NB-ARC domain 221 451 IPR002182 GO:0043531
Gabi3298g00002 525 SUPERFAMILY "Winged helix" DNA-binding domain 441 519 IPR036390 -
Gabi3298g00002 525 Gene3D - 371 454 IPR042197 -
Gabi3298g00002 525 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 159 IPR035897 -
Gabi3298g00002 525 PRINTS Disease resistance protein signature 236 251 - -
Gabi3298g00002 525 PRINTS Disease resistance protein signature 405 419 - -
Gabi3298g00002 525 PRINTS Disease resistance protein signature 312 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3298g00002 Gabi-Chr3298 30497 32415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3298g00002 213 521 WRKY Transcription Factor Family AT5G45050 32.903 1.37e-47 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3298g00002 - - var:108344061 714.531