Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3293g00059 ATGGCTTGCCTGAAAACCCTAGTTTCTCTCTCTACACTTTTCATCTTCACCGTCATGGCTGACGACGCCGCTGTTATGTCGAAGCTTCTAAAATCCCTGACTCCTGCGCCATCCGGCTGGTCTCCGGCGACTCCATTCTGCCAATGGGAAGGCATCAAATGCGACTCCTCAAACCGCGTGATCACCATAAGCATTTCCTCGCTGTCCCTCGCCGGAACACTCCCCTCCGATCTCAACTCACTCTCCCAACTCACCTCTCTCTCCCTTCAAGACAACGCTCTCTCCGGTCCCATTCCCTCCCTCGCCAACCTCTCCGCCCTCGAAACAGCCTTCCTCGGCCGCAACAACTTCACCTCCGTCCCCGCCGGCGCATTCGCCGGCCTCACCTCCCTCCGGAGACTCAGCCTCGGCAACAACCCCAACCTCGTCCCCTGGACAATCCCCTCCGAGTTGACTCAGTCCCCCAACCTCAACAACCTCGAACTCGGAACCGCTAGCATCGCCGGCGACTTACCGGATTTCTTCGACAAGCTTCCGAGCCTCCAGAGCGTTCGTCTCTCCTACAACAACCTCACCGGCGGTTTGCCAAACTCTCTTGCCGCTTCTTCAATCGTGAATTTGTGGCTCAACAATCAGGACAATGGGTTAACCGGCACGATTGAGGTGCTCTCGAAGATGACGCAGTTGTCTCAGGTTTGGCTCCACAAGAACCAGCTCACCGGTCCGATACCCGATTTGTCCGAATGTAATAACTTGTTTGATCTTCAGCTCAGGGATAACCAGTTAACCGGTGTGGTTCCGAGTTCTTTAATGGGTCTTTTGAGTTTGAAGAATGTTTCCTTGGACAACAATGAGCTTCAGGGTCCTGTGCCGGCGTTCGGTAAAGGTGTGAAGGTTACTCTTGACGGAATCAATAGCTTTTGTCGAGATACTCCTGGACCTTGCGATGCAAGGGTGATGGTTCTGCTTCAAGTTGCTGAGGCTTTTGGGTTTCCTATTCGGTTGGCGAATTCGTGGAAAGGGAATGATCCTTGTCAAGGTTGGAGTTTCGTTGTTTGTACTGCGGGGAAGATTACTACGGTGAATTTTGCAAAGCAGGGTTTGCAGGGAACCATTTCGCCTGCATTTGCCAATTTGACTGATTTGAGGAACTTGTATCTAAATGGGAATAATTTGACCGGTTCTATACCTGAGAGCTTGATCACTTTGTCTCAGCTTGAGACTCTTGATATGTCTAATAACAATTTGTCTGGAGATGTTCCGAAATTCCCATCAAAGGTGAAGTTAGTAACTGCGGGGAATGTTTTGCTTGGGCAAAGTATTAGTTCTGGTGGTGGAGGGAGTGGAACGACTCCATCTGTGGGGTCTGCACCTGGTGGAAGTCCAGCTGAGTCGGGAAATGGTTCTTCATTGACGCCTGGTTGGATTGCTGGTATAGTGATTATTGCTATGTTTTTTGTTGCGGTGGTGTTGTTTGTGTCGTGCAAGTGTTATTACAAAAATCGGCACCGGAAATTTGGAAGGGTAAATAATCCTGAAAATGGTAAAGGAAATGTTAAGCTTGATGTAATGAGTGTTTCTAAGGGATATGGTGGTGTAACCAGCGAGTTGCAAAGCCAGAGCAGTGGTGATAATAGTAACCTCCATGTTTTTGAGGGTGGGACTGGGAATGCTACGATTTCGTTACAAGTTCTGAGACAAGTAACGAATAATTTCAGTGAGGATAACATTTTAGGTAGGGGAGGGTTTGGAGTTGTTTATAGAGGGGAGTTGCATGATGGAACTAAAATTGCTGTCAAGAGGATGGAATCTGTTGCAATGGGAAACAAAAGAATGAATGAGTTCCAGGCAGAGATTGCTGTTCTTAGTAAAGTTAGGCATAGACATTTGGTTGCTCTTTTAGGATATTGCATCAATGGCAATGAGAGGCTTTTGGTGTATGAGTATATGCCTCAAGGGACATTAACTCAGCATCTGTTTGAATGGCGTGAACATGGGTGTTCTCCTTTGACATGGAAACAAAGGGTAGCAATCGCTTTGGATGTAGCTAGGGGGGTGGAATACTTGCACAGCTTAGCTCAGCAAAGCTTCATTCATAGAGACTTAAAACCCTCAAACATACTATTAGGTGATGACATGAGAGCAAAGGTTGCAGATTTTGGGTTGGTTAAAAATGCACCAGATGGCAAGTATTCTGTTGAGACAAGGTTGGCTGGAACATTCGGGTATCTTGCACCTGAGTATGCAGCTACTGGAAGAGTGACAACCAAAGTGGATGTTTACGCATTTGGAGTAGTTTTGATGGAACTGATCACCGGTAGAAGGGCGTTGGATGATACTGTGCCTGATGAAAGATCTCACTTGGTTACATGGTTCCGTAGGGTACTAATTAACAAGGAAAATATTCCAAAGGCAATTGATCAAACTCTCAACCCTGATGAGGAAACCATGGAGAGCATATACAAAGTGGCTGAGCTGGCAGGCCATTGCACCGCACGTGAACCATACCCAAGGCCAGATATGGGACATGCAGTGAATGTCTTGTCTCCTCTTGTGGAGCAATGGAAACCTACTAACCATGAAGAAGAAGACACCTATGGCATTAACCTTCAGATGAGCCTTCCTCAAGCCCTACAAAGGTGGCAAGCCAATGAAGGCACTTCCACAATGTTTAATGACATGTCCTTCTCACAAACCCAATCGAGCATTGCCTCTAAACCTTCAGGATTTGCAGACTCCTTTGATTCAATGGATTGCCGGTAG 2763 0.473 MACLKTLVSLSTLFIFTVMADDAAVMSKLLKSLTPAPSGWSPATPFCQWEGIKCDSSNRVITISISSLSLAGTLPSDLNSLSQLTSLSLQDNALSGPIPSLANLSALETAFLGRNNFTSVPAGAFAGLTSLRRLSLGNNPNLVPWTIPSELTQSPNLNNLELGTASIAGDLPDFFDKLPSLQSVRLSYNNLTGGLPNSLAASSIVNLWLNNQDNGLTGTIEVLSKMTQLSQVWLHKNQLTGPIPDLSECNNLFDLQLRDNQLTGVVPSSLMGLLSLKNVSLDNNELQGPVPAFGKGVKVTLDGINSFCRDTPGPCDARVMVLLQVAEAFGFPIRLANSWKGNDPCQGWSFVVCTAGKITTVNFAKQGLQGTISPAFANLTDLRNLYLNGNNLTGSIPESLITLSQLETLDMSNNNLSGDVPKFPSKVKLVTAGNVLLGQSISSGGGGSGTTPSVGSAPGGSPAESGNGSSLTPGWIAGIVIIAMFFVAVVLFVSCKCYYKNRHRKFGRVNNPENGKGNVKLDVMSVSKGYGGVTSELQSQSSGDNSNLHVFEGGTGNATISLQVLRQVTNNFSEDNILGRGGFGVVYRGELHDGTKIAVKRMESVAMGNKRMNEFQAEIAVLSKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFEWREHGCSPLTWKQRVAIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRRALDDTVPDERSHLVTWFRRVLINKENIPKAIDQTLNPDEETMESIYKVAELAGHCTAREPYPRPDMGHAVNVLSPLVEQWKPTNHEEEDTYGINLQMSLPQALQRWQANEGTSTMFNDMSFSQTQSSIASKPSGFADSFDSMDCR 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3293g00059 920 Gene3D Ribonuclease Inhibitor 22 313 IPR032675 -
Gabi3293g00059 920 FunFam Receptor-like kinase TMK4 20 313 - -
Gabi3293g00059 920 CDD STKc_IRAK 578 851 - -
Gabi3293g00059 920 PANTHER OSJNBA0070M12.3 PROTEIN 4 920 - -
Gabi3293g00059 920 MobiDBLite consensus disorder prediction 441 467 - -
Gabi3293g00059 920 SUPERFAMILY Protein kinase-like (PK-like) 552 848 IPR011009 -
Gabi3293g00059 920 SMART LRR_typ_2 104 127 IPR003591 -
Gabi3293g00059 920 SMART LRR_typ_2 178 201 IPR003591 -
Gabi3293g00059 920 SMART LRR_typ_2 128 154 IPR003591 -
Gabi3293g00059 920 SMART LRR_typ_2 379 403 IPR003591 -
Gabi3293g00059 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672|GO:0006468
Gabi3293g00059 920 FunFam receptor protein kinase TMK1 650 867 - -
Gabi3293g00059 920 ProSiteProfiles Protein kinase domain profile. 572 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3293g00059 920 Gene3D Phosphorylase Kinase; domain 1 533 649 - -
Gabi3293g00059 920 Pfam Protein tyrosine and serine/threonine kinase 575 844 IPR001245 GO:0004672|GO:0006468
Gabi3293g00059 920 MobiDBLite consensus disorder prediction 901 920 - -
Gabi3293g00059 920 Pfam Leucine rich repeat 82 140 IPR001611 GO:0005515
Gabi3293g00059 920 Pfam Leucine rich repeat 374 416 IPR001611 GO:0005515
Gabi3293g00059 920 SMART serkin_6 572 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3293g00059 920 Gene3D Transferase(Phosphotransferase) domain 1 650 874 - -
Gabi3293g00059 920 ProSitePatterns Protein kinases ATP-binding region signature. 578 600 IPR017441 GO:0005524
Gabi3293g00059 920 FunFam receptor protein kinase TMK1 532 649 - -
Gabi3293g00059 920 FunFam Leucine-rich repeat receptor-like kinase 317 440 - -
Gabi3293g00059 920 Gene3D Ribonuclease Inhibitor 317 440 IPR032675 -
Gabi3293g00059 920 Pfam Leucine rich repeat N-terminal domain 20 55 IPR013210 -
Gabi3293g00059 920 Pfam Leucine rich repeat N-terminal domain 336 353 IPR013210 -
Gabi3293g00059 920 SUPERFAMILY L domain-like 27 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3293g00059 Gabi-Chr3293 478880 482380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3293g00059 60 853 Receptor kinase-like Gene Family AT5G07280 32.690 1.64e-90 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi3293g00059 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3293g00059 K00924 - gmx:100286794 1355.5