Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3293g00044 ATGGACGGAGCGCCGCCCTCCGCCGCCGCCGCCGGGATCGGTGGTCCGGCGCCGTTCCTTTTGAAGACATACGACATGGTGGATGATTCCTCCACCGACGAAATCGTTTCGTGGAGCTCCTCCAACTGCAGCTTCGTCGTTTGGAACCCGCCGGAGTTCGCTCGCCTTCTTCTCCCAACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTACGGTTTTCGAAAAATACATCCTGAGCAATGGGAATTTGCTAATGATGATTTTGTTAAAGATCAAAAGCATCTTCTTAAAAATATTCACCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCAGGTTCTCTTGTGGATTCAGAAAGGGCAACATATGAGGAAGAAATAGAAAAACTTTCACGTGAGAAAGCTTCTCTTGAATCCAATATTTTTAGCTTTAAACAACATCAGAAAAAAGCAAAGCCTCGTCTGGAAGATTTTCAGCAGCGATTAGAGGGTACAGAGAAGAGGCAGAAAAAATTGCTGGACTTCTTCGAGAAGGCTCTGCAGAGTCCTACTTTTGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTATCGGCATATAATAAGAGAAGGCGATTGCCTCAGGTTGATCACTTGCAGCCAGTTGCTGAAAGTAGCTTTGTTGACAATCTTAGCAATTTCAGAATGGAATCTGGGAATGTTTTTCATCGGGATTTCTCAAATAAACTCAGACTAGAACTGTCACCAGCTGTTTCAGATATGAACCTAGTATCACGTAGCACAGAGAGTTCCAATGAAAATGGAGAAAGCTCTCAGAAGCTGTCTGAAGGAGAACCGAAAGGAGTTCAGACAAGAACAGCTCTTGCATTTGCACCTGAAACATTAGAGCTTGCAGATTCTGGGGCATCTTTTACTTTTAAGATGGATTCATGTTTATCACGAAGAGCAACAACTGCTGAGATGCACTCTTTGGGGCCAAGTAGTGAAGAAGGTGATAGTCATATATCCTGCCAACTAAATTTAACTCTGGCATCTTGTCCATTGCAAGTCAACAAAAATTCATACTCGGCCAGATCACCCCAAATAGACTGTCAAGAAATTGGTAAATTGGCAGAGTCAAGATTTTATGCCAATGGTAAGGAATCTGATAGTGGAGTTTCCTCAAACCGAAATGTAGCTAATGATGTTGTTACCAATTTAGCGTCGTCACAGGAGGCTCCAAGTAACAACCAAGTTAACCCAGCTGCTCCAGGTAGAGTGAATGATGTGTTTTGGGAACAGTTCCTTACGGAAAGACCAGGCTGTTCAGATGAAGAGGCAATATCTAACTACCGAGCAAACTCATATGATGAGCAAGACGAAAGGCAGTCAGTTCATGGAATGTCTAAAAACATTAAGAATATGGATCAGCTCACACTCTGA 1443 0.4338 MDGAPPSAAAAGIGGPAPFLLKTYDMVDDSSTDEIVSWSSSNCSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPEQWEFANDDFVKDQKHLLKNIHRRKPIHSHSHPPGSLVDSERATYEEEIEKLSREKASLESNIFSFKQHQKKAKPRLEDFQQRLEGTEKRQKKLLDFFEKALQSPTFVEHLSRKIESMDLSAYNKRRRLPQVDHLQPVAESSFVDNLSNFRMESGNVFHRDFSNKLRLELSPAVSDMNLVSRSTESSNENGESSQKLSEGEPKGVQTRTALAFAPETLELADSGASFTFKMDSCLSRRATTAEMHSLGPSSEEGDSHISCQLNLTLASCPLQVNKNSYSARSPQIDCQEIGKLAESRFYANGKESDSGVSSNRNVANDVVTNLASSQEAPSNNQVNPAAPGRVNDVFWEQFLTERPGCSDEEAISNYRANSYDEQDERQSVHGMSKNIKNMDQLTL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3293g00044 480 MobiDBLite consensus disorder prediction 263 286 - -
Gabi3293g00044 480 MobiDBLite consensus disorder prediction 455 480 - -
Gabi3293g00044 480 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3293g00044 480 MobiDBLite consensus disorder prediction 263 290 - -
Gabi3293g00044 480 Coils Coil 126 153 - -
Gabi3293g00044 480 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3293g00044 480 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3293g00044 480 Gene3D - 14 109 IPR036388 -
Gabi3293g00044 480 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3293g00044 480 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3293g00044 480 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi3293g00044 480 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 12 273 IPR027725 -
Gabi3293g00044 480 FunFam Heat shock transcription factor 1 12 109 - -
Gabi3293g00044 480 SUPERFAMILY "Winged helix" DNA-binding domain 16 108 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3293g00044 Gabi-Chr3293 380318 386070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3293g00044 19 480 HSF AT4G13980 54.292 8.34e-163 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi3293g00044 HSF_DNA-bind 1.4e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3293g00044 K09419 - gmx:100786408 791.186