Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3293g00034 ATGGCATTGTGTAATAACCTCAGAAATCTCTTGAGGCAGAGTGCTACTCAGAGCAGACAAGCACCTGCTGCATCTATGCTTAATTATGTTCGCTGCATGTCTTCAACTAAGCTATTCATTGGAGGTCTTTCATATGGTGTTGATGAGCAGTCTCTTAGGGATGCATTTTCAAGCTTTGGTGATGTGGTCGAGGCAAAGGTTATCACTGATAGGGACACTGGAAGGTCAAAGGGATTTGGATTTGTCAACTTCAACAATGTGGAGTCAGCAGGTGCAGCACTCTCTGCAATGGATGGGAAGGAGTTAAATCAACGAAGCATTCGGGTGAGCTATGCAAATGATAGGCCTGCTGGACCTCGATCTGGTGGTTATCGTAGGGATGATGATTTTGGTGGCCCAGCCTTTTAA 408 0.4534 MALCNNLRNLLRQSATQSRQAPAASMLNYVRCMSSTKLFIGGLSYGVDEQSLRDAFSSFGDVVEAKVITDRDTGRSKGFGFVNFNNVESAGAALSAMDGKELNQRSIRVSYANDRPAGPRSGGYRRDDDFGGPAF 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3293g00034 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Gabi3293g00034 135 PANTHER GEO13361P1-RELATED 22 121 - -
Gabi3293g00034 135 MobiDBLite consensus disorder prediction 109 135 - -
Gabi3293g00034 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Gabi3293g00034 135 Gene3D - 9 133 IPR012677 -
Gabi3293g00034 135 SUPERFAMILY RNA-binding domain, RBD 31 127 IPR035979 GO:0003676
Gabi3293g00034 135 CDD RRM2_NsCP33_like 37 112 - -
Gabi3293g00034 135 SMART rrm1_1 37 110 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3293g00034 Gabi-Chr3293 308964 312132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3293g00034 21 122 Eukaryotic Initiation Factors Gene Family AT4G34110 37.255 2.07e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3293g00034 - - gmx:100527220 198.749