Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3293g00028 ATGCGATATTATGGCTTAGCGATCCCTGGAAGCGATTATCGCTTCTGCGTCCCCACCGTAACTCCTATATCCCTCAGGCCCACCAGGCCCATGACCCGAACCAGTATCGGGTTCGGGTATCCGAAGGCGAAGGCCACCCTCAACGACGGTTTCGTGGCGGAGGAGGCTTCGGAATTGAGCTTCTACAAGCTTCTGGGCATATCGGAATCGGGGTCGTTGACTGAGATCAAGCACGCTTACAAGCAGCTGGCTCGAAAGTACCACCCGGACGTGTCGCCACCGGGTCGGGTCGAGGAGTACACGAAGAGGTTCATTCAGGTGCAGGAGGCCTACGAGACCTTATCTGATCCTTCAAGGAGAGCCATGTACGATAGAGACATGGCCAGTGGTATTCACTTCGCATTCAACGCTCGTAGACGCTACCACAACCATGATCAGGTGATTGAACAAAAAAGTGAATGGAAAGCTCGTTGGCATTCTCAACTGTCTGAGCTGAAGAGAAGAAGTAAGAGCAAGGATACTGGAGGGAATATGTCATGGGCTGCTCGAATGCGCCAGCAGAGGGAGGAATCATCAAATGAATTGTGA 588 0.5255 MRYYGLAIPGSDYRFCVPTVTPISLRPTRPMTRTSIGFGYPKAKATLNDGFVAEEASELSFYKLLGISESGSLTEIKHAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDRDMASGIHFAFNARRRYHNHDQVIEQKSEWKARWHSQLSELKRRSKSKDTGGNMSWAARMRQQREESSNEL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3293g00028 195 SUPERFAMILY Chaperone J-domain 57 133 IPR036869 -
Gabi3293g00028 195 Gene3D DnaJ domain 51 157 IPR036869 -
Gabi3293g00028 195 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Gabi3293g00028 195 PRINTS DnaJ domain signature 80 95 IPR001623 -
Gabi3293g00028 195 PRINTS DnaJ domain signature 99 119 IPR001623 -
Gabi3293g00028 195 PRINTS DnaJ domain signature 62 80 IPR001623 -
Gabi3293g00028 195 PRINTS DnaJ domain signature 119 138 IPR001623 -
Gabi3293g00028 195 CDD DnaJ 61 116 IPR001623 -
Gabi3293g00028 195 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 54 192 - -
Gabi3293g00028 195 Coils Coil 181 195 - -
Gabi3293g00028 195 SMART dnaj_3 59 119 IPR001623 -
Gabi3293g00028 195 MobiDBLite consensus disorder prediction 165 195 - -
Gabi3293g00028 195 FunFam Chaperone protein dnaJ 20, chloroplastic 45 156 - -
Gabi3293g00028 195 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Gabi3293g00028 195 Pfam DnaJ domain 61 124 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3293g00028 Gabi-Chr3293 241630 244327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3293g00028 62 124 C2H2 Transcription Factor Family AT1G74250 45.455 1.26e-08 52.0