Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3292g00003 ATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCTCTTGATCGGGCAGACTTTGGTCGGAAGGGGCGCAGGCTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATTAGAAGGCCTGCTGGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCCAAGACCTTATTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAAAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTTGAAGCTACTAATATGAGCAAGTTACTTGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGACGATGATAAGCGAAATGGATATAGCCCTGAGAGAGGCCATGATCGTCAACGGTATAGAAGCCGCGATGGAAGGCGATCACCCAGTCCTTACCGTAGAGAAAGGGGTAGTCCTGATTATGGCCATGGTGCCAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGTCGTGGCCGTAGCCGTAGTGGAAGCCCGCATCGGAGAGAGCGAGGTAGCCCTGCTTATGGGGGTAGAAGCCTTAGTCCATATAGAAGAGAGGGGGATGGTTCTGATCGTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCGCGGCATTGTTCCCTCCCATAGTCCTCCTGATGAAGGAGAGAGGACTAGCCCTCAAAATGATCGTGGTTCTAGCCGTAGTCCATATGATAATGTGAAGGCTAGCCCTGGAAACGGCCATGACTCCAGACATAGTCCTGATGCAAAAGGGAATTCTAGCCCTTACAATGGTTATGAAGGGAGCCCAAATACTATGCCTGAGCCGAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCGTGCATGAAAGATACCGCAGCCAGTCACCCCCTGCAGAAGAATGA 993 0.4914 MEDERDAEAAIRALDRADFGRKGRRLRVEWTKQERGIRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDKRNGYSPERGHDRQRYRSRDGRRSPSPYRRERGSPDYGHGASPYKRERSSPDYGRGRSRSGSPHRRERGSPAYGGRSLSPYRREGDGSDRVRDSSRSPYHKERGRTDRGIVPSHSPPDEGERTSPQNDRGSSRSPYDNVKASPGNGHDSRHSPDAKGNSSPYNGYEGSPNTMPEPRDSPNYGGPESPVHERYRSQSPPAEE 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3292g00003 330 MobiDBLite consensus disorder prediction 127 330 - -
Gabi3292g00003 330 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 55 277 - -
Gabi3292g00003 330 SUPERFAMILY RNA-binding domain, RBD 1 50 IPR035979 GO:0003676
Gabi3292g00003 330 FunFam Serine/arginine-rich splicing factor RS31 46 136 - -
Gabi3292g00003 330 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 125 IPR000504 GO:0003723
Gabi3292g00003 330 MobiDBLite consensus disorder prediction 211 255 - -
Gabi3292g00003 330 Gene3D - 41 135 IPR012677 -
Gabi3292g00003 330 SMART rrm1_1 55 121 IPR000504 GO:0003723
Gabi3292g00003 330 MobiDBLite consensus disorder prediction 127 200 - -
Gabi3292g00003 330 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 118 IPR000504 GO:0003723
Gabi3292g00003 330 MobiDBLite consensus disorder prediction 32 51 - -
Gabi3292g00003 330 SUPERFAMILY RNA-binding domain, RBD 39 131 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3292g00003 Gabi-Chr3292 11559 14851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3292g00003 7 127 Eukaryotic Initiation Factors Gene Family AT3G16380 30.469 3.50e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3292g00003 K12893 - gmx:100796509 506.523