Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3292g00002 ATGTTTCTCAGCTTGTGTTCGGGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCACGGCAGTCAGAGCTGGAGCGGCTTTTCAGACGATATGGGAAGGTTGATCGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCTCTTGATCGGGCAGACTTTGGTCGGAAGGGGCGCAGGCTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATTAGAAGGCCTGCTGGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCCAAGACCTTATTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAAAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTTGAAGCTACTAATATGAGCAAGTTACTTGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGACGATGATAAGCGAAATGGATATAGCCCTGAGAGAGGCCATGATCGTCAACGGTATAGAAGCCGCGATGGAAGGCGATCACCCAGTCCTTACCGTAGAGAAAGGGGTAGTCCTGATTATGGCCATGGTGCCAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGTCGTGGCCGTAGCCGTAGTGGAAGCCCGCATCGGAGAGAGCGAGGTAGCCCTGCTTATGGGGGTAGAAGCCTTAGTCCATATAGAAGAGAGGGGGATGGTTCTGATCGTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCGCGGCATTGTTCCCTCCCATAGTCCTCCTGATGAAGGAGAGAGGACTAGCCCTCAAAATGATCGTGGTTCTAGCCGTAGTCCATATGATAATGTGAAGGCTAGCCCTGGAAACGGCCATGACTCCAGACATAGTCCTGATGCAAAAGGGAATTCTAGCCCTTACAATGGTTATGAAGGGAGCCCAAATACTATGCCTGAGCCGAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCGTGCATGAAAGATACCGCAGCCAGTCACCCCCTGCAGAAGAATGA 1143 0.4838 MFLSLCSGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRADFGRKGRRLRVEWTKQERGIRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDKRNGYSPERGHDRQRYRSRDGRRSPSPYRRERGSPDYGHGASPYKRERSSPDYGRGRSRSGSPHRRERGSPAYGGRSLSPYRREGDGSDRVRDSSRSPYHKERGRTDRGIVPSHSPPDEGERTSPQNDRGSSRSPYDNVKASPGNGHDSRHSPDAKGNSSPYNGYEGSPNTMPEPRDSPNYGGPESPVHERYRSQSPPAEE 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3292g00002 380 MobiDBLite consensus disorder prediction 177 380 - -
Gabi3292g00002 380 MobiDBLite consensus disorder prediction 177 250 - -
Gabi3292g00002 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 168 IPR000504 GO:0003723
Gabi3292g00002 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 71 IPR000504 GO:0003723
Gabi3292g00002 380 Gene3D - 96 185 IPR012677 -
Gabi3292g00002 380 Gene3D - 7 95 IPR012677 -
Gabi3292g00002 380 FunFam Serine/arginine-rich splicing factor RS31 96 186 - -
Gabi3292g00002 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 175 IPR000504 GO:0003723
Gabi3292g00002 380 SMART rrm1_1 105 171 IPR000504 GO:0003723
Gabi3292g00002 380 SMART rrm1_1 12 79 IPR000504 GO:0003723
Gabi3292g00002 380 MobiDBLite consensus disorder prediction 261 305 - -
Gabi3292g00002 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 83 IPR000504 GO:0003723
Gabi3292g00002 380 SUPERFAMILY RNA-binding domain, RBD 11 177 IPR035979 GO:0003676
Gabi3292g00002 380 CDD RRM1_AtRSp31_like 11 82 - -
Gabi3292g00002 380 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 105 327 - -
Gabi3292g00002 380 FunFam Serine/arginine-rich splicing factor RS31 10 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3292g00002 Gabi-Chr3292 10945 14851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3292g00002 9 180 Eukaryotic Initiation Factors Gene Family AT1G49760 23.810 1.19e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3292g00002 K12893 - gmx:100796509 595.119