Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3292g00001 ATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCACGGCAGTCAGAGCTGGAGCGGCTTTTCAGACGATATGGGAAGGTTGATCGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAGAGAGATGCTGAGGCTGCAATTCGTGCTCTTGATCGGGCAGACTTTGGTCGGAAGGGGCGCAGGCTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATTAGAAGGCCTGCTGGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCCAAGACCTTATTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAAAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAATCAGAGGATGATGCTAGCAGAGCACTTGAAGCTACTAATATGAGCAAGTTACTTGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGACGATGATAAGCGAAATGGATATAGCCCTGAGAGAGGCCATGATCGTCAACGGTATAGAAGCCGCGATGGAAGGCGATCACCCAGTCCTTACCGTAGAGAAAGGGGTAGTCCTGATTATGGCCATGGTGCCAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGTCGTGGCCGTAGCCGTAGTGGAAGCCCGCATCGGAGAGAGCGAGGTAGCCCTGCTTATGGGGGTAGAAGCCTTAGTCCATATAGAAGAGAGGGGGATGGTTCTGATCGTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCGCGGCATTGTTCCCTCCCATAGTCCTCCTGATGAAGGAGAGAGGACTAGCCCTCAAAATGATCGTGGTTCTAGCCGTAGTCCATATGATAATGTGAAGGCTAGCCCTGGAAACGGCCATGACTCCAGACATAGTCCTGATGCAAAAGGGAATTCTAGCCCTTACAATGGTTATGAAGGGAGCCCAAATACTATGCCTGAGCCGAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCGTGCATGAAAGATACCGCAGCCAGTCACCCCCTGCAGAAGAATGA 1116 0.4848 MRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRADFGRKGRRLRVEWTKQERGIRRPAGSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDKRNGYSPERGHDRQRYRSRDGRRSPSPYRRERGSPDYGHGASPYKRERSSPDYGRGRSRSGSPHRRERGSPAYGGRSLSPYRREGDGSDRVRDSSRSPYHKERGRTDRGIVPSHSPPDEGERTSPQNDRGSSRSPYDNVKASPGNGHDSRHSPDAKGNSSPYNGYEGSPNTMPEPRDSPNYGGPESPVHERYRSQSPPAEE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3292g00001 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Gabi3292g00001 371 SUPERFAMILY RNA-binding domain, RBD 2 169 IPR035979 GO:0003676
Gabi3292g00001 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Gabi3292g00001 371 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Gabi3292g00001 371 SMART rrm1_1 96 162 IPR000504 GO:0003723
Gabi3292g00001 371 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gabi3292g00001 371 MobiDBLite consensus disorder prediction 168 371 - -
Gabi3292g00001 371 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Gabi3292g00001 371 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gabi3292g00001 371 MobiDBLite consensus disorder prediction 168 241 - -
Gabi3292g00001 371 CDD RRM1_AtRSp31_like 2 73 - -
Gabi3292g00001 371 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 318 - -
Gabi3292g00001 371 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Gabi3292g00001 371 Gene3D - 86 176 IPR012677 -
Gabi3292g00001 371 Gene3D - 1 85 IPR012677 -
Gabi3292g00001 371 MobiDBLite consensus disorder prediction 252 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3292g00001 Gabi-Chr3292 10803 14851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3292g00001 4 171 Eukaryotic Initiation Factors Gene Family AT1G49760 23.784 2.02e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3292g00001 K12893 - gmx:100796509 590.882