Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi328g00020 ATGAAGAGGAAGAGAGACATGGATGGTGAAGCCAGCGACAGCGACCTTAACCAAGATGTGAGAGATGATTTGTACACTGAAGTGTGGCATGCATGCTCCGGGCCATCCGTTTATGTTCCTCGCGCTGGGGAGAAGGTTTTCTATTTCCCTCAAGGTCACTTAGAGCAGGTTGCTGTATTTACTCAGCATCTGCAAGATGACCATATGGAAACTCCTGTTTATGATTTACCTTCTAAGATCTTATGCAGGGTTGGGTCTGTTAAGTTAAAGGCTGAAGCTCACACAGATGAGGTGTTTGCTCAAGTCACTTTAGTTCCCGAACCACAGCAAGATGATCTTAGATTGGAGCAAGAAGACACTTATCAGATACCTTACAGAACTATAACATACACCTTTAGTAAGATACTAACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAGGCGACATGCTGATGGATGCTTCCCTCCTCTGGATATGACTCATCAACCACCAACACAAGAGCTGGTTGCGAAAGACATGCATGGGTTTGAGTGGCGTTTTCGACATATATATCGTGGTCAGCCGAAACGACACTTGCTTACTAGTGGCTGGAGCAAATTCGTGAATGCAAAAAAGCTTGTTGCTGGAGATGCATGCATTTTCGTTAGTGGGGAAAATGGAGAACTTTTTATTGGGATTCGTAGAGCAATTAAACAATACAACAGTGCATCCACATATCCATCTCTGATATCGGGTCAATGCATGAAACTTGGAATATTGACTAGTGCTTCCCATGCTATTGCCAGAGGATCCATGTTCAGTGTCTATTACCGCCCTTGGACCAATCCCTTTGAATTTATTATTCCTCTGAAAAGCTACATGAAGTCAACTGAAACGGACTATTCAATTGGAATGAGAGTTCAAATGCGGTTTAAAGTTGAAGAATCTCCAAGAAGATATGCAGGTACAATAATTGGTGTTGAAGATATCGATAGTATCAGGTGGCCTGGTTCAGAATGGAGACGTCTCAAGGTGCAATGGGATGTCATACTAGATAGGTATATGCATCCTGAAAGGGTTTGTCCTTGGTGGATTGAACCATTGAAATCTGCCAAGAAGAAGTACATTCCTATTTCCCCCCTATCAAAAAAGGCATGTGTATTTAACCCGTCATTGCCTGGATTAAGTGGCTTGCCCAAGGATGACGAAGTTCAAAATTCAGCCAATCCTGCATCTCAGAAAATGGATTGGGACTTACAAAGTCAAGATTACAATACAAATCAGCTACCTTTTCTTATGCTAGACCCTCTTCACCAATCTCTTGGCTACCCATTGTCATCTCCACATGAAGACTTATCAACTTCGAGTTCAAATGTGAACTCCACTGGTTCTGAATCCCAGGGATGGCCTTCTTCTCATTCTAAAGATGAAAATGATGTTCCTTTTGGCCAACCTGGCAGTTGTAGTAGATACAAGCTTTTTGGGGTTAGCTTAACTGATAACCAACCAAAGCTCCCTTCACAACAATTTTCTGTTCTTAGCGAGATTTCAAGTCTCCTTTCCAATCCTCCATTATGTATTACCTCTGGGAAAACATGCAAGAAGTGTCGCTCTGTTAATAGGAGTTGCACAAAGGTGCTTAAGCTGGGAAGTGCTCTTGGAAGAGCGATTAACCTCTCTCATTTTCCTGGATATAATGAACTCATTTCTGAACTTGACTGCATGTTTGATTTTGGAGGAAGCTTAATCAATGGAAGCAGTGGATGGCATGTGACCCACATAGATGCTGATGGAGATATAACGCTGTTAGGGGATTATCCATGGCAGGATTTCCAGTTCATGGTGCAAAAGATGATCATATGTCCAAAGGATGGTATTAACAACCTCGATCCAAGCTCCTCAGCAGATCCTACAAGCCTTTAG 1914 0.4248 MKRKRDMDGEASDSDLNQDVRDDLYTEVWHACSGPSVYVPRAGEKVFYFPQGHLEQVAVFTQHLQDDHMETPVYDLPSKILCRVGSVKLKAEAHTDEVFAQVTLVPEPQQDDLRLEQEDTYQIPYRTITYTFSKILTPSDTSTHGGFSIPRRHADGCFPPLDMTHQPPTQELVAKDMHGFEWRFRHIYRGQPKRHLLTSGWSKFVNAKKLVAGDACIFVSGENGELFIGIRRAIKQYNSASTYPSLISGQCMKLGILTSASHAIARGSMFSVYYRPWTNPFEFIIPLKSYMKSTETDYSIGMRVQMRFKVEESPRRYAGTIIGVEDIDSIRWPGSEWRRLKVQWDVILDRYMHPERVCPWWIEPLKSAKKKYIPISPLSKKACVFNPSLPGLSGLPKDDEVQNSANPASQKMDWDLQSQDYNTNQLPFLMLDPLHQSLGYPLSSPHEDLSTSSSNVNSTGSESQGWPSSHSKDENDVPFGQPGSCSRYKLFGVSLTDNQPKLPSQQFSVLSEISSLLSNPPLCITSGKTCKKCRSVNRSCTKVLKLGSALGRAINLSHFPGYNELISELDCMFDFGGSLINGSSGWHVTHIDADGDITLLGDYPWQDFQFMVQKMIICPKDGINNLDPSSSADPTSL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi328g00020 637 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Gabi328g00020 637 CDD B3_DNA 132 232 IPR003340 GO:0003677
Gabi328g00020 637 FunFam Auxin response factor 297 369 - -
Gabi328g00020 637 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 623 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gabi328g00020 637 Gene3D - 297 371 - -
Gabi328g00020 637 MobiDBLite consensus disorder prediction 399 413 - -
Gabi328g00020 637 SMART B3_2 132 234 IPR003340 GO:0003677
Gabi328g00020 637 ProSiteProfiles PB1 domain profile. 538 621 IPR000270 GO:0005515
Gabi328g00020 637 MobiDBLite consensus disorder prediction 443 475 - -
Gabi328g00020 637 Gene3D - 534 627 - -
Gabi328g00020 637 SUPERFAMILY DNA-binding pseudobarrel domain 126 240 IPR015300 -
Gabi328g00020 637 FunFam Auxin response factor 130 234 - -
Gabi328g00020 637 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Gabi328g00020 637 MobiDBLite consensus disorder prediction 394 413 - -
Gabi328g00020 637 Pfam Auxin response factor 260 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gabi328g00020 637 MobiDBLite consensus disorder prediction 442 478 - -
Gabi328g00020 637 SUPERFAMILY CAD & PB1 domains 547 613 - -
Gabi328g00020 637 Gene3D - 129 234 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi328g00020 Gabi-Chr328 129675 140066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi328g00020 537 630 B3 DNA Binding Superfamily AT5G62000 43.617 8.14e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gabi328g00020 B3 1.7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi328g00020 - - lja:Lj1g3v4764520.2 903.664