Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi328g00020 | ATGAAGAGGAAGAGAGACATGGATGGTGAAGCCAGCGACAGCGACCTTAACCAAGATGTGAGAGATGATTTGTACACTGAAGTGTGGCATGCATGCTCCGGGCCATCCGTTTATGTTCCTCGCGCTGGGGAGAAGGTTTTCTATTTCCCTCAAGGTCACTTAGAGCAGGTTGCTGTATTTACTCAGCATCTGCAAGATGACCATATGGAAACTCCTGTTTATGATTTACCTTCTAAGATCTTATGCAGGGTTGGGTCTGTTAAGTTAAAGGCTGAAGCTCACACAGATGAGGTGTTTGCTCAAGTCACTTTAGTTCCCGAACCACAGCAAGATGATCTTAGATTGGAGCAAGAAGACACTTATCAGATACCTTACAGAACTATAACATACACCTTTAGTAAGATACTAACTCCATCAGACACAAGTACACATGGTGGATTCTCTATTCCGAGGCGACATGCTGATGGATGCTTCCCTCCTCTGGATATGACTCATCAACCACCAACACAAGAGCTGGTTGCGAAAGACATGCATGGGTTTGAGTGGCGTTTTCGACATATATATCGTGGTCAGCCGAAACGACACTTGCTTACTAGTGGCTGGAGCAAATTCGTGAATGCAAAAAAGCTTGTTGCTGGAGATGCATGCATTTTCGTTAGTGGGGAAAATGGAGAACTTTTTATTGGGATTCGTAGAGCAATTAAACAATACAACAGTGCATCCACATATCCATCTCTGATATCGGGTCAATGCATGAAACTTGGAATATTGACTAGTGCTTCCCATGCTATTGCCAGAGGATCCATGTTCAGTGTCTATTACCGCCCTTGGACCAATCCCTTTGAATTTATTATTCCTCTGAAAAGCTACATGAAGTCAACTGAAACGGACTATTCAATTGGAATGAGAGTTCAAATGCGGTTTAAAGTTGAAGAATCTCCAAGAAGATATGCAGGTACAATAATTGGTGTTGAAGATATCGATAGTATCAGGTGGCCTGGTTCAGAATGGAGACGTCTCAAGGTGCAATGGGATGTCATACTAGATAGGTATATGCATCCTGAAAGGGTTTGTCCTTGGTGGATTGAACCATTGAAATCTGCCAAGAAGAAGTACATTCCTATTTCCCCCCTATCAAAAAAGGCATGTGTATTTAACCCGTCATTGCCTGGATTAAGTGGCTTGCCCAAGGATGACGAAGTTCAAAATTCAGCCAATCCTGCATCTCAGAAAATGGATTGGGACTTACAAAGTCAAGATTACAATACAAATCAGCTACCTTTTCTTATGCTAGACCCTCTTCACCAATCTCTTGGCTACCCATTGTCATCTCCACATGAAGACTTATCAACTTCGAGTTCAAATGTGAACTCCACTGGTTCTGAATCCCAGGGATGGCCTTCTTCTCATTCTAAAGATGAAAATGATGTTCCTTTTGGCCAACCTGGCAGTTGTAGTAGATACAAGCTTTTTGGGGTTAGCTTAACTGATAACCAACCAAAGCTCCCTTCACAACAATTTTCTGTTCTTAGCGAGATTTCAAGTCTCCTTTCCAATCCTCCATTATGTATTACCTCTGGGAAAACATGCAAGAAGTGTCGCTCTGTTAATAGGAGTTGCACAAAGGTGCTTAAGCTGGGAAGTGCTCTTGGAAGAGCGATTAACCTCTCTCATTTTCCTGGATATAATGAACTCATTTCTGAACTTGACTGCATGTTTGATTTTGGAGGAAGCTTAATCAATGGAAGCAGTGGATGGCATGTGACCCACATAGATGCTGATGGAGATATAACGCTGTTAGGGGATTATCCATGGCAGGATTTCCAGTTCATGGTGCAAAAGATGATCATATGTCCAAAGGATGGTATTAACAACCTCGATCCAAGCTCCTCAGCAGATCCTACAAGCCTTTAG | 1914 | 0.4248 | MKRKRDMDGEASDSDLNQDVRDDLYTEVWHACSGPSVYVPRAGEKVFYFPQGHLEQVAVFTQHLQDDHMETPVYDLPSKILCRVGSVKLKAEAHTDEVFAQVTLVPEPQQDDLRLEQEDTYQIPYRTITYTFSKILTPSDTSTHGGFSIPRRHADGCFPPLDMTHQPPTQELVAKDMHGFEWRFRHIYRGQPKRHLLTSGWSKFVNAKKLVAGDACIFVSGENGELFIGIRRAIKQYNSASTYPSLISGQCMKLGILTSASHAIARGSMFSVYYRPWTNPFEFIIPLKSYMKSTETDYSIGMRVQMRFKVEESPRRYAGTIIGVEDIDSIRWPGSEWRRLKVQWDVILDRYMHPERVCPWWIEPLKSAKKKYIPISPLSKKACVFNPSLPGLSGLPKDDEVQNSANPASQKMDWDLQSQDYNTNQLPFLMLDPLHQSLGYPLSSPHEDLSTSSSNVNSTGSESQGWPSSHSKDENDVPFGQPGSCSRYKLFGVSLTDNQPKLPSQQFSVLSEISSLLSNPPLCITSGKTCKKCRSVNRSCTKVLKLGSALGRAINLSHFPGYNELISELDCMFDFGGSLINGSSGWHVTHIDADGDITLLGDYPWQDFQFMVQKMIICPKDGINNLDPSSSADPTSL | 637 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi328g00020 | 637 | Pfam | B3 DNA binding domain | 132 | 233 | IPR003340 | GO:0003677 | |
Gabi328g00020 | 637 | CDD | B3_DNA | 132 | 232 | IPR003340 | GO:0003677 | |
Gabi328g00020 | 637 | FunFam | Auxin response factor | 297 | 369 | - | - | |
Gabi328g00020 | 637 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 22 | 623 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Gabi328g00020 | 637 | Gene3D | - | 297 | 371 | - | - | |
Gabi328g00020 | 637 | MobiDBLite | consensus disorder prediction | 399 | 413 | - | - | |
Gabi328g00020 | 637 | SMART | B3_2 | 132 | 234 | IPR003340 | GO:0003677 | |
Gabi328g00020 | 637 | ProSiteProfiles | PB1 domain profile. | 538 | 621 | IPR000270 | GO:0005515 | |
Gabi328g00020 | 637 | MobiDBLite | consensus disorder prediction | 443 | 475 | - | - | |
Gabi328g00020 | 637 | Gene3D | - | 534 | 627 | - | - | |
Gabi328g00020 | 637 | SUPERFAMILY | DNA-binding pseudobarrel domain | 126 | 240 | IPR015300 | - | |
Gabi328g00020 | 637 | FunFam | Auxin response factor | 130 | 234 | - | - | |
Gabi328g00020 | 637 | ProSiteProfiles | B3 DNA-binding domain profile. | 132 | 234 | IPR003340 | GO:0003677 | |
Gabi328g00020 | 637 | MobiDBLite | consensus disorder prediction | 394 | 413 | - | - | |
Gabi328g00020 | 637 | Pfam | Auxin response factor | 260 | 341 | IPR010525 | GO:0003677|GO:0005634|GO:0006355|GO:0009725 | |
Gabi328g00020 | 637 | MobiDBLite | consensus disorder prediction | 442 | 478 | - | - | |
Gabi328g00020 | 637 | SUPERFAMILY | CAD & PB1 domains | 547 | 613 | - | - | |
Gabi328g00020 | 637 | Gene3D | - | 129 | 234 | IPR015300 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi328g00020 | Gabi-Chr328 | 129675 | 140066 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi328g00020 | 537 | 630 | B3 DNA Binding Superfamily | AT5G62000 | 43.617 | 8.14e-21 | 95.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3-ARF | Gabi328g00020 | B3 | 1.7e-23 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi328g00020 | - | - | lja:Lj1g3v4764520.2 | 903.664 |