Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi328g00010 ATGGCGGAAGGGAAGGAAGAGAGTAAATCTAGCGAGGAAAGTGTGAAACTGTTCGTAGGGCAAGTGCCGAAGCACATGACGGAAGATGAGTTGCTTGGAATGTTCAAGGAGTTCGCGTTGGTTGATGAAGTCAACATCATCAAGGACAAAGCCACACGCGCTTCTCGAGGTTGTTGCTTCGTGATTTGTCCCTCAAGGGAAGAGGCTGATAAGGCCGTCAATGCGTGTCATAATAAGAAAACGCTACCTGGGGCAGCTAGTCCATTGCAAGTGAAGTATGCAGACGGGGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAATGTTTCTGAAGTCGAAGTCTCTGCACTTTTCTCCAACTATGGAACTATTAAGGATTTACAGATTTTAAGAGGTTCTCAGCAAACAAGTAAAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCCTTAGTTGTCAAATGGGCTGATACAGAAAAGGAAAGACTAGCTCGAAGAGCTCAAAAAGCACAGTCCCAAGCTTCTAATGTACCACATGCTGATTCTCAGCACCCATCATTGTTTGGAGCCCTGCCTATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGACTCGTGCCGTACCGGTTGCCAATGCAGAATCAACCTGGTTTCCATAGTATGATGCCTCACATGAATCAAGGAAATGCATTGCGACCTGATCTTGGGCCCAATATGAACCCTAGAAATTATCCTGTGCCTCCTGCAAGTTATGTTGGCTCTTATCCTCATGTGCCAGGTCTGCACCATCCAATGGCATATCCTACAGGATTGATTAGTCCAGGTCCTATGAGTAGTTCTCCTGGGTCCATTTCACCTGCTGGTGGAAATAGTAACTCTGCTACATCTTCAGGCGCCAGCAAAATTTCCGGGGGTCAGGTCGAAGGACCACCCGGTGCCAATCTTTTTATTTATCACATACCTCAAGAATTTGGAGATGAAGAACTTGCAAATGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCCAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTTAGTTATGATTCTCCAGATGCTGCTCAAGCAGCCATTGGTATGATGCATGGATTCCAATTAGGAAGTAAGAAATTGAAGGTTCAGCTTAAGAGGGACAACAAACAAGGCAAACCTTACTGA 1293 0.4432 MAEGKEESKSSEESVKLFVGQVPKHMTEDELLGMFKEFALVDEVNIIKDKATRASRGCCFVICPSREEADKAVNACHNKKTLPGAASPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERLARRAQKAQSQASNVPHADSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLVPYRLPMQNQPGFHSMMPHMNQGNALRPDLGPNMNPRNYPVPPASYVGSYPHVPGLHHPMAYPTGLISPGPMSSSPGSISPAGGNSNSATSSGASKISGGQVEGPPGANLFIYHIPQEFGDEELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPDAAQAAIGMMHGFQLGSKKLKVQLKRDNKQGKPY 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi328g00010 430 CDD RRM1_2_CELF1-6_like 104 179 - -
Gabi328g00010 430 MobiDBLite consensus disorder prediction 305 335 - -
Gabi328g00010 430 FunFam RNA-binding protein BRN1 312 422 - -
Gabi328g00010 430 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Gabi328g00010 430 MobiDBLite consensus disorder prediction 304 338 - -
Gabi328g00010 430 Gene3D - 2 99 IPR012677 -
Gabi328g00010 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Gabi328g00010 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Gabi328g00010 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Gabi328g00010 430 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Gabi328g00010 430 Gene3D - 100 190 IPR012677 -
Gabi328g00010 430 SMART rrm1_1 346 419 IPR000504 GO:0003723
Gabi328g00010 430 SMART rrm1_1 16 92 IPR000504 GO:0003723
Gabi328g00010 430 SMART rrm1_1 104 179 IPR000504 GO:0003723
Gabi328g00010 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 423 IPR000504 GO:0003723
Gabi328g00010 430 PANTHER RNA BINDING PROTEIN 14 423 - -
Gabi328g00010 430 CDD RRM1_2_CELF1-6_like 16 92 - -
Gabi328g00010 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Gabi328g00010 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Gabi328g00010 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Gabi328g00010 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 417 IPR000504 GO:0003723
Gabi328g00010 430 Gene3D - 316 422 IPR012677 -
Gabi328g00010 430 SUPERFAMILY RNA-binding domain, RBD 103 425 IPR035979 GO:0003676
Gabi328g00010 430 FunFam RNA-binding protein BRN1 2 99 - -
Gabi328g00010 430 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Gabi328g00010 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi328g00010 Gabi-Chr328 92387 98064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi328g00010 344 420 Eukaryotic Initiation Factors Gene Family AT2G23350 35.065 3.51e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi328g00010 K13207 - gmx:100813239 746.117