Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3289g00016 ATGGAGCCTGTGGTGCTTAATTTGAACAGAGAAATTGGTGGTGGTGGTGGTGGTGGGAATAAGAGTGGTGAAGGTTTCATTGATAGAAGTAAAGTGAGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCCGAAGATGTTTATAAGCTTCTTTTGAGATGCTCTTATCAGGTTACTTCAGTAAGGTCAGCAAGACAGGTAATTGATGCACTGAATGCAGAGGGGCAGTATATCGATATCATACTAGCTGAAGTTGACCTTCCGATGAAGAAGGGCATGAAGATGTTGAAGTACATAACACGGGACAAAGAATTACGCAGAATTCCTGTTATAATGATGTCCGCACAAGATGAGATATCCGTTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGAAGGAGGCACATGCTTGGACTTGTAGAGAAGAACATCTTGAATTATGATTTTGATCTGGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTACCACCTTGTTCTCCGATGACACAGATGACAAGTCCAAGAGAAGCACCAATCCAGAGACACGCTTCTCAGTCCAACAAGAGCAAGAGTCTGCTATTGCCATTGCCCCTGCTGTTAAGGAACTTCCAGATGCTCGTGCATTAGAATATCGGCCTGATGTGCATGGAATTAATGACCACAGAACAGGACTTTTTTCATCTGGTCCAAAGAAGACTGAACTAAGGATTGGGGAGTCATCAGCCTTCTTCACATATGTTAAAGCATCAATGCTGAAGAGTAATTTTGAAGAAATTGTTTGTGTTGACAACAATGCTGCTACACGTGTGAGGATGAATGATATTCATCAAGCATGTGCTCAACAAGGGGTTAATGACCTTCAAATACGTGGAAATGGAGAGACATGTGAAAGTCAATCGCAAGAAGACTTACCGAGCAGCAATAGTATTCCTGATTCTTTCTCTATTGAGAGGTCTTGTACTCCACCTGCATCAGTGGAAATTTCACAGCAAAAGCATTACAAGGAAGAAAATTTACATCAGGGTGTGATGCATCCAAGAAATGGGACTTATTGTTCTGAGCTTGAAGTATCTGGCATGGCTGCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAGTGTATCAAAAGAATATCCAGGACCTGCAGAGTCATGCTAGTTCAGCTATGATTGCACAGTACAATCATCTTCCCCAAGGTGGTCCTCATGCAACGGGGATGACACCCTTCCCATATTACCCAATGAGTGTATGCTTACAACCTGGTCAGATTCCTACACCTCATTCATGGCCATCATTTGGAAGTTCAAGGTCATCCGAAGCAAAATTAGGTAAAGTTGATCGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTCGATAAGAAAATTAGGTATGTCAATCGGAAACAACTTGCTGAAAGGCGGCCTCGTGTGCGGGGACAGTTTGTCAGGAAGTTGATTGGTGCTAATGTGGATCTTAATGGACAACCTGCTTCCATGGATTATGATGAAGATGATGAAGAGGATGAAGATGATCAGGGAGCAAGAGATTTTTCTCCTGAGGATGCCTGA 1686 0.4235 MEPVVLNLNREIGGGGGGGNKSGEGFIDRSKVRILLCDNDSKSSEDVYKLLLRCSYQVTSVRSARQVIDALNAEGQYIDIILAEVDLPMKKGMKMLKYITRDKELRRIPVIMMSAQDEISVVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRHMLGLVEKNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSTNPETRFSVQQEQESAIAIAPAVKELPDARALEYRPDVHGINDHRTGLFSSGPKKTELRIGESSAFFTYVKASMLKSNFEEIVCVDNNAATRVRMNDIHQACAQQGVNDLQIRGNGETCESQSQEDLPSSNSIPDSFSIERSCTPPASVEISQQKHYKEENLHQGVMHPRNGTYCSELEVSGMAAQHAYPYYISGVVNHVMMPSSAQVYQKNIQDLQSHASSAMIAQYNHLPQGGPHATGMTPFPYYPMSVCLQPGQIPTPHSWPSFGSSRSSEAKLGKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLIGANVDLNGQPASMDYDEDDEEDEDDQGARDFSPEDA 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3289g00016 561 SMART REC_2 32 147 IPR001789 GO:0000160
Gabi3289g00016 561 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Gabi3289g00016 561 MobiDBLite consensus disorder prediction 537 561 - -
Gabi3289g00016 561 ProSiteProfiles Response regulatory domain profile. 33 151 IPR001789 GO:0000160
Gabi3289g00016 561 MobiDBLite consensus disorder prediction 315 343 - -
Gabi3289g00016 561 ProSiteProfiles CCT domain profile. 481 523 IPR010402 GO:0005515
Gabi3289g00016 561 SUPERFAMILY CheY-like 30 157 IPR011006 -
Gabi3289g00016 561 Pfam CCT motif 481 523 IPR010402 GO:0005515
Gabi3289g00016 561 MobiDBLite consensus disorder prediction 531 561 - -
Gabi3289g00016 561 PANTHER TWO-COMPONENT RESPONSE REGULATOR 32 228 IPR045279 GO:0009736
Gabi3289g00016 561 MobiDBLite consensus disorder prediction 180 209 - -
Gabi3289g00016 561 Gene3D - 32 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3289g00016 Gabi-Chr3289 442085 447638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3289g00016 21 560 Response Regulator Gene Family AT5G61380 49.682 0.0 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gabi3289g00016 Response_reg 3e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3289g00016 K12127 - gmx:100799728 917.146