Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3289g00013 ATGCACAGAACATCGTCATCTTCAGAGCATAGGCCATTAAGTGGGCTTGATCCCACAATACTTGCCGAACTGGGTTTGAAGGATGCTGAGAAACTTGTTGACCTCCAAAGTAATTCAGTAAAATCTTACCTTTTAAAGGCCAATGCTCTTTTTCTGTTGGAGAAATATGAGGATGCCCGGGATGCTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGGGTGTCATCTAGTTCAACAGGGATGAGTACACATGGACAAATAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGTTCTTGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTATTTATTAGTCCTAGAACGTGTTTCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCCGAGGAATATGCTGAAAGGAAGCAAGAGCAAGATGGTTTAATCAACGTCGGTGTAGATTTTCTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTTATGGTGAGAAGAATAATGGAAGGGAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCTGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGAAGATTTCGCATCATCCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCGCCAGAAGGGACAAGAGAAAGAGAGGATTTACAGGAATTGACATATAATGCAGCAGAAAGTGCTCGATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGACTTGAGAGACTCCAGATGGTTGAAGCAATGATACCCTCGCTACGGGACCCAGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCCAACAGGAGGCCTTCGGAAAGATTGGATCTCTTACGCATAAGAGATACCACAGAGAGGATTAGACGAGGCCTGATATTTCTCCGAGCTGAGGAACAAGGCTGCAGAATTCAGTAA 1194 0.4238 MHRTSSSSEHRPLSGLDPTILAELGLKDAEKLVDLQSNSVKSYLLKANALFLLEKYEDARDAILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGQIERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCFISVTLKNIIQKNFPEEYAERKQEQDGLINVGVDFLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDSSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTREREDLQELTYNAAESARSWIRRAKEAARQDQRRLERLQMVEAMIPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3289g00013 397 Gene3D - 190 291 IPR046336 -
Gabi3289g00013 397 SMART lon_5 190 389 IPR003111 -
Gabi3289g00013 397 SUPERFAMILY PUA domain-like 191 387 IPR015947 -
Gabi3289g00013 397 Pfam Zinc finger, C3HC4 type (RING finger) 107 144 - -
Gabi3289g00013 397 SUPERFAMILY RING/U-box 102 170 - -
Gabi3289g00013 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 185 IPR013083 -
Gabi3289g00013 397 Coils Coil 319 339 - -
Gabi3289g00013 397 ProSitePatterns Zinc finger RING-type signature. 122 131 IPR017907 -
Gabi3289g00013 397 Gene3D - 319 389 - -
Gabi3289g00013 397 Gene3D Tetratricopeptide repeat domain 22 86 IPR011990 GO:0005515
Gabi3289g00013 397 PANTHER RING FINGER PROTEIN 127 22 389 - -
Gabi3289g00013 397 Pfam ATP-dependent protease La (LON) substrate-binding domain 191 387 IPR003111 -
Gabi3289g00013 397 SUPERFAMILY TPR-like 23 84 IPR011990 GO:0005515
Gabi3289g00013 397 ProSiteProfiles Lon N-terminal domain profile. 188 389 IPR003111 -
Gabi3289g00013 397 CDD RING-HC_LONFs_rpt2 104 148 - -
Gabi3289g00013 397 SMART ring_2 107 144 IPR001841 -
Gabi3289g00013 397 ProSiteProfiles Zinc finger RING-type profile. 107 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3289g00013 Gabi-Chr3289 288198 298434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3289g00013 105 177 C3H Transcription Factor Family AT2G42030 34.667 5.06e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3289g00013 - - lja:Lj0g3v0312049.1 728.783