LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi3289g00012	ATGAAGGCAAATGAACCCGAAGGTTTGGCATCGGATACACTTCATTATGTGTATGAGCTTGTACAGAATGGCAATGCGGCATTTCGAGAGAACAGAATGGAAGAGGCAATCCGCTTTTACACAAAAGCCAATAACATCAAATCTGGTGATCCGATCATACTCAGCAATCGAAGCGCAACTTATATTAGGATTAGCCAATATTTAATGCACAGAACATCGTCATCTTCAGAGCATAGGCCATTAAGTGGGCTTGATCCCACAATACTTGCCGAACTGGGTTTGAAGGATGCTGAGAAACTTGTTGACCTCCAAAGTAATTCAGTAAAATCTTACCTTTTAAAGGCCAATGCTCTTTTTCTGTTGGAGAAATATGAGGATGCCCGGGATGCTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGGGTGTCATCTAGTTCAACAGGGATGAGTACACATGGACAAATAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGTTCTTGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTATTTATTAGTCCTAGAACGTGTTTCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCCGAGGAATATGCTGAAAGGAAGCAAGAGCAAGATGGTTTAATCAACGTCGGTGTAGATTTTCTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTTATGGTGAGAAGAATAATGGAAGGGAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCTGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGAAGATTTCGCATCATCCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCGCCAGAAGGGACAAGAGAAAGAGAGGATTTACAGGAATTGACATATAATGCAGCAGAAAGTGCTCGATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGACAAGATCAAAGAAGACTTGAGAGACTCCAGATGGTTGAAGCAATGATACCCTCGCTACGGGACCCAGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCCAACAGGAGGCCTTCGGAAAGATTGGATCTCTTACGCATAAGAGATACCACAGAGAGGATTAGACGAGGCCTGATATTTCTCCGAGCTGAGGAACAAGGCTGCAGAATTCAGTAA	1398	0.4213	MKANEPEGLASDTLHYVYELVQNGNAAFRENRMEEAIRFYTKANNIKSGDPIILSNRSATYIRISQYLMHRTSSSSEHRPLSGLDPTILAELGLKDAEKLVDLQSNSVKSYLLKANALFLLEKYEDARDAILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGQIERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCFISVTLKNIIQKNFPEEYAERKQEQDGLINVGVDFLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDSSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTREREDLQELTYNAAESARSWIRRAKEAARQDQRRLERLQMVEAMIPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi3289g00012	465	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	166	253	IPR013083	-
	Gabi3289g00012	465	Pfam	ATP-dependent protease La (LON) substrate-binding domain	259	455	IPR003111	-
	Gabi3289g00012	465	SMART	tpr_5	108	141	IPR019734	GO:0005515
	Gabi3289g00012	465	SMART	tpr_5	17	50	IPR019734	GO:0005515
	Gabi3289g00012	465	Coils	Coil	387	407	-	-
	Gabi3289g00012	465	Gene3D	Tetratricopeptide repeat domain	15	165	IPR011990	GO:0005515
	Gabi3289g00012	465	SUPERFAMILY	TPR-like	16	148	IPR011990	GO:0005515
	Gabi3289g00012	465	SMART	ring_2	175	212	IPR001841	-
	Gabi3289g00012	465	ProSitePatterns	Zinc finger RING-type signature.	190	199	IPR017907	-
	Gabi3289g00012	465	SUPERFAMILY	PUA domain-like	259	455	IPR015947	-
	Gabi3289g00012	465	ProSiteProfiles	Zinc finger RING-type profile.	175	213	IPR001841	-
	Gabi3289g00012	465	Pfam	Zinc finger, C3HC4 type (RING finger)	175	212	-	-
	Gabi3289g00012	465	ProSiteProfiles	Lon N-terminal domain profile.	256	457	IPR003111	-
	Gabi3289g00012	465	Gene3D	-	258	359	IPR046336	-
	Gabi3289g00012	465	SMART	lon_5	258	457	IPR003111	-
	Gabi3289g00012	465	SUPERFAMILY	RING/U-box	170	238	-	-
	Gabi3289g00012	465	PANTHER	RING FINGER PROTEIN 127	17	457	-	-
	Gabi3289g00012	465	Gene3D	-	387	457	-	-
	Gabi3289g00012	465	CDD	RING-HC_LONFs_rpt2	172	216	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi3289g00012	Gabi-Chr3289	288198	298625	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi3289g00012	163	216	C3H Transcription Factor Family	AT1G74990	35.088	1.13e-08	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi3289g00012	-		-	lja:Lj0g3v0312049.1	833.943