Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3289g00010 ATGGCTGCTCAATCCCCTCCCTCTTCTCTCGACCATGCCCTTCGTGATGTTGACGATTACGTTTGGGCAAATGAACCCGAAGGTTTGGCATCGGATACACTTCATTATGTGTATGAGCTTGTACAGAATGGCAATGCGGCATTTCGAGAGAACAGAATGGAAGAGGCAATCCGCTTTTACACAAAAGCCAATAACATCAAATCTGGTGATCCGATCATACTCAGCAATCGAAGCGCAACTTATATTAGGATTAGCCAATATTTAATGCACAGAACATCGTCATCTTCAGAGCATAGGCCATTAAGTGGGCTTGATCCCACAATACTTGCCGAACTGGGTTTGAAGGATGCTGAGAAACTTGTTGACCTCCAAAGTAATTCAGTAAAATCTTACCTTTTAAAGGCCAATGCTCTTTTTCTGTTGGAGAAATATGAGGATGCCCGGGATGCTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGGGCTTCTCTTCAAAATTTGGAAAGGGTGTCATCTAGTTCAACAGGGATGAGTACACATGGACAAATAGAGCGTAATGATGACTTTGATTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGTTCTTGTCTATTTCAGTCAATGGATTGTGGGAACAGATGCCCATTGTGCAGGACAGTTCTATTTATTAGTCCTAGAACGTGTTTCATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCCGAGGAATATGCTGAAAGGAAGCAAGAGCAAGATGGTTTAATCAACGTCGGTGTAGATTTTCTCCCTCTTTTTGTCATGGATGTTGTCATACCATGTCAAAAGTTTCCACTCAATATATTTGAACCTCGGTATAGACTTATGGTGAGAAGAATAATGGAAGGGAATCATCGGATGGGAATGGTTATAATTGATTCTTCAACAGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCTGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGAAGATTTCGCATCATCCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGATATTATGCCGCCAGAAGGGACAAGAGAAAGAGAGGATTTACAGGAATTGACATATAATGCAGCAGAAAGTGCTCGATCATGGATAAGAAGAGCTAAAGAAGCAGCAAGACAAGGTAATCAAAGAAGACTTGAGAGACTCCAGATGGTTGAAGCAATGATACCCTCGCTACGGGACCCAGAGCGCTTTAGTTTTTGGCTGGCTACCCTCTCCAACAGGAGGCCTTCGGAAAGATTGGATCTCTTACGCATAAGAGATACCACAGAGAGGATTAGACGAGGCCTGATATTTCTCCGAGCTGAGGAACAAGGCTGCAGAATTCAGTAA 1461 0.4264 MAAQSPPSSLDHALRDVDDYVWANEPEGLASDTLHYVYELVQNGNAAFRENRMEEAIRFYTKANNIKSGDPIILSNRSATYIRISQYLMHRTSSSSEHRPLSGLDPTILAELGLKDAEKLVDLQSNSVKSYLLKANALFLLEKYEDARDAILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGQIERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCFISVTLKNIIQKNFPEEYAERKQEQDGLINVGVDFLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVIIDSSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTREREDLQELTYNAAESARSWIRRAKEAARQGNQRRLERLQMVEAMIPSLRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3289g00010 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 273 IPR013083 -
Gabi3289g00010 486 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 476 IPR003111 -
Gabi3289g00010 486 Gene3D - 278 379 IPR046336 -
Gabi3289g00010 486 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Gabi3289g00010 486 PANTHER RING FINGER PROTEIN 127 36 478 - -
Gabi3289g00010 486 SMART ring_2 195 232 IPR001841 -
Gabi3289g00010 486 SMART lon_5 278 478 IPR003111 -
Gabi3289g00010 486 ProSiteProfiles Lon N-terminal domain profile. 276 478 IPR003111 -
Gabi3289g00010 486 Gene3D Tetratricopeptide repeat domain 35 185 IPR011990 GO:0005515
Gabi3289g00010 486 SUPERFAMILY TPR-like 36 168 IPR011990 GO:0005515
Gabi3289g00010 486 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Gabi3289g00010 486 SUPERFAMILY RING/U-box 190 258 - -
Gabi3289g00010 486 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Gabi3289g00010 486 SUPERFAMILY PUA domain-like 279 476 IPR015947 -
Gabi3289g00010 486 Gene3D - 411 478 - -
Gabi3289g00010 486 SMART tpr_5 128 161 IPR019734 GO:0005515
Gabi3289g00010 486 SMART tpr_5 37 70 IPR019734 GO:0005515
Gabi3289g00010 486 CDD RING-HC_LONFs_rpt2 192 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3289g00010 Gabi-Chr3289 288198 299805 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3289g00010 183 236 C3H Transcription Factor Family AT1G74990 35.088 1.42e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3289g00010 - - lja:Lj0g3v0312049.1 861.292