Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi3289g00008 | ATGGCGCTGTTCCGAAGATTCTTTTACCGGAAGCCGCCGGATCGCCTTCTTGAGATCTCCGAGAGGGTCTATGTTTTTGATTGTTGCTTCTCCACGGATGTCTTGGAAGAAGATGAGTACAAAGTTTATATTGGGGGCATTGTAGCTCAGCTACAAGATCACTTTCCAGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGGATGGGGTTAGGCGCAGCCAAATTTCAGATATATTGTCTCAGTATGACATGACAGTTATGGAGTACCCTCGGCAATATGAGGGATGTCCACTTCTGCCTTTGGAGATGATTCATCACTTCCTTAGATCAAGTGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAATGTGCTTTTGATGCATTGTGAAAGGGGGGGTTGGCCTGTGCTGGCATTTATGCTAGCTGGTCTTCTCTTGTACAGGAAACAGTACAATGGGGAGCAGAAGACTCTTGAAATGGTCTACAAGCAAGCACCCAAAGAACTTCTACAATTTTTGTCTCCTTTGAATCCACACCCTTCTCAGTTAAGATATCTTCAGTATATTTCCAGGAGACATTTGGGTTCTGAGTGGCCTCCATCAGAAACACCCTTATATTTGGATTGTCTGATTCTTAGAGTCCTTCCATTATTTGATGGTGGAAAAGGTTGCAGGCCTGTTGTGCGTGTTTATGGTCCGGACCCTTCAAAACCTGCTATTAGAAGTTCTAAGCTTCTTTTCTCAACTTCAAAATCCCGAAAACATGTTCGCCACTACCTACAGGCAGAGTGTATGCTCGTGAAAATTGATATTCATTGTCGTGTTCAAGGGGATGTCGTTATTGAATGCATACATTTAAGTGAAGATTTCGTTCGTGAGGAGATGATGTTTAGAATCATGTTTCATACTGCATTTGTACGGTCAAATATATTGATTCTTAGCCGAGATGAAATCGATATATTGTGGGATGCAAAGGATCAGTTCCCCAAGGACTTTAAGTCTGAGGTGCTTTTTTTGGACGCTGATGCTGTTCTACCAAATCTAGCCTCAGTCATTGTGAGTGGAGATGCAAATGAGGCTGAAAGTGCTTCACCTGAGGAATTCTATGAAGTGGAAGAGATCTTCAGCAATGTAATTGATACACAGGAAGGTAAAGGGGATTGCGATTCTCCAATGGTTCGTGACAATGCAGTAGATGATGGAAGTCATAAAGATGTCTGGAAAGAGTATTCAGATCCTCATACTTTTCAGGATTCTTCATCAGGTGATGGGATTCACCAACAGGTTGGAAGGACGGGTTTTGGTATTGATGCAGTGAAAGACATTACTGTTGATGATGTGAAGTTCAAGCCCAATGAGAGGGTGGATTCAGATACTCATGCAGTGAAAGACATTGCTATAGATGATGGAGAAAATAAATCAACTTCCACTGGAGTCACTTTTGGCGCTCTGGAGACAAAGGAAGTCACTGTGGATGAGCATGATGAGTTGGAAGTTATGCAAAACAAGTATGATGAAGATAACAATGCAACAAAAAAAGAATTAGAATCCGAGGAGGGGCAGCAGGTGCATGATCTTTCCAGACAAGAATCCGATAAACTACTTGCATCTGTTGTTCCTTCAAAGTCAAATCCAATGGAAGATACAATTGCAGCAAAGCATAAGACTAAACATCAAGAACCACCACAGCATCAAGAACCACCACAGGGTTTTCAGGCAAAACAAGCAAAACCAAATGCTCCAACTAGGTGGATTCCTTCTAACAAGGGTTCTTATCAAGAGTCAATGCATGTCTCATATCCACCATCAAGGCATCAGAATTCACCAGAGCAGTCAAATTCTACCTCTACTAAGGAGAAAATAACTGATGCCAAAGGAAGACATGCTTCTGGTTCTCATGTCTCTGGAGTAGATGTTTCTAGGGAGATGCTGAAAAATTGTAATGGGGTCAATTCAAAATCTTCAGACAGCATAGCAGAAATAGATGTAGACTTAAACTCTTCACTATCATCAATTATGTCAGTTAAAGAGACATCTCTTCAGTCTGCTACTCAAGAACCACAATTGTGCTCCGATGAAGTGCCACAATCTCCTTCTCCACCAATTTCACCATCTTCATCCTTGAATGGTAAGGTGTCTATAATGCCAAAGCCGCCGCCGCTGCCACCACCACCACCACCCACTTCAACATTATTTAACAGGCAAAATAGAGGGATGAACTTACAACTTGCAAATTCTCCTCCTCCTCCTCCTCCACCCCCACCTCCATTTTTCGGGGAAAAAAGAGAGGCCTTTTTACCTCCTCCTACCCATTGGAAATCTGTTTATTCATCAACTAACATAGTCGGAGACAATGGTGAGGCTTTACCTTCTCCTCCTGCTCCTCCCATTGCAAATAGATCAACTACAACAAAAGTTTATGAAGTACTTGGTGCAATTTCCCTTACCTCACCACCACCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTTTGTGTTCTTTGGATAGAGCTTCATTCACTCCTTCCTCAATATCCCCAACTACATCACTTAAAGCTTCACCTCCACCACCACCACCACCTCCTTTTTGTAGAGTTCAACCTCCACCTCCATCTCCTTTCAGTAGAGCTTCACCAACACCAACTCCTCCTCCTCCTCCCTCTTTTAGTAGAACTCCATCACCACCACCTCCACCTCCTCCTCCTCCTAGTAGAGCTCCACCGCCTTCACCACCACCTCTTCCTCCATCAAATGGAGCACCACCTTCACCTCCTTTTAGTAGAGCACCACCACCTCCGCCACCACCTCTTCCTCCATCTAGTGGAGAACCACCTCCACCTCCATCTTCTTTTAGTAGAGCTCCACCGCCTCCGCCACCACCTATTCCTCCATCGAGTGGAGCTCCACCGCCTCCACCTCCACCTCCTTTTAATAGAGCGCAACCACCTTCACCACCACCTCTTCCTCCATCAAGTGGAGCACCACCTCCACCACCACCTCCTTTGATGTCTAGAACTCCACCTCCCCCGCCTCCACCAACTCATGGAGCACCATCACCACCACCGCCTCCAATGCGTGGAGCTCCACCACCACCGCCTCCAATGAATGGAGGAGCACCTCCTCCTCCGCCACCTCCAGGAGGCCGAGGCCCACCTCCTCCACCACTTCCAGGTGGCCGAGGCCCACCTCCTCCGCCACTTCCGGGAGGTCGTGCTCCTGCTCCTCCAGGTGGTGCTCCTCCTCCACCTCCACCTTTAGGTTCCAAAGGTGCAGTTGGAGCTGATCCAAGAGGGAGAGGACGTGGACTTGCACGTCCTACAGGTGCTGGTGCAATGGCAACTCGAAAATCCTCCTTCAAACCTCTGCATTGGAGTAAGGTATCAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACACGGAGAACCTCAAATTGGACAAGAGTTTGATGTTTCAGAGCTCGAGAAGCTTTTTTCAGCAAATGTTCCAAAACCTGCTGATTCTGGTGGTAAATCTGGATCGCGGCGCAATTCTGTTGGATCCAAACCTGACAAAGTCACCTTGGTTGACCTAAGGAGGGCTTATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTGCTTGCTATGGACGAGTCGGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCTACCAAAGAGGAGATGGAACTTTTGAAGGGATACACTGGTGACAAGGAGAATTTGGGGAAGTGTGAAAAGTTTTTTATGGAGCTGATGAAAGTGCCACGGGTGGAATCAAAATTAAGAGTATTCTCTTTCAAGATTCAGTTTGGGTCTCAGATTATAGAGTTTAAGATGAGTTTAAACACAGTGAACTCTGTCTGTGAAGAGGTCCGAAAGTCGCTCAAAGTGAAGGAGATTATGAAGAAAATCCTTTATTTGGGCAACACATTGAATCAAGGAACAGCGAGGGGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAAATGACCCTGATGCATTATCTTTGCAAGGTCCTAGCTGAAAAGTCTCCAGGACTACTTGATTTTCACCTTGACCTTGTTAGCCTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAAGGGATTAGAAAAGGTTAAACAGGAGTTTACTGCATCTGAGAATGATGGCCCTGTATCCGAAGTTTTCCGTAAGACATTGAAAGGATTCATTGATGTAGCTGAGTCAGAGGTAGCATTTGTAACAAACCTATATTCTGTTGTGGGTAGAAATGCAGATGCACTTGCACTATATTTTGGCGAGGATCCTGCCCGTTGTCCATTTGAGCAAGTTACTGCAACTCTCTTAAATTTTATAAGGTTGTTTCGGAAAGCACATGAAGAGAATTGCAAACAAGCAGAGTTGGAGAAGAAGAAAGCTGAGAAAGAGGCTGAAATGGAGAAGGCGGAGAAGGCTAAAGGCACTAACTTGACGAGGAAGAGTGCAAAAGATAGAGAAGAAAGCTGA | 4590 | 0.4503 | MALFRRFFYRKPPDRLLEISERVYVFDCCFSTDVLEEDEYKVYIGGIVAQLQDHFPDASFMVFNFREGDGVRRSQISDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEQKTLEMVYKQAPKELLQFLSPLNPHPSQLRYLQYISRRHLGSEWPPSETPLYLDCLILRVLPLFDGGKGCRPVVRVYGPDPSKPAIRSSKLLFSTSKSRKHVRHYLQAECMLVKIDIHCRVQGDVVIECIHLSEDFVREEMMFRIMFHTAFVRSNILILSRDEIDILWDAKDQFPKDFKSEVLFLDADAVLPNLASVIVSGDANEAESASPEEFYEVEEIFSNVIDTQEGKGDCDSPMVRDNAVDDGSHKDVWKEYSDPHTFQDSSSGDGIHQQVGRTGFGIDAVKDITVDDVKFKPNERVDSDTHAVKDIAIDDGENKSTSTGVTFGALETKEVTVDEHDELEVMQNKYDEDNNATKKELESEEGQQVHDLSRQESDKLLASVVPSKSNPMEDTIAAKHKTKHQEPPQHQEPPQGFQAKQAKPNAPTRWIPSNKGSYQESMHVSYPPSRHQNSPEQSNSTSTKEKITDAKGRHASGSHVSGVDVSREMLKNCNGVNSKSSDSIAEIDVDLNSSLSSIMSVKETSLQSATQEPQLCSDEVPQSPSPPISPSSSLNGKVSIMPKPPPLPPPPPPTSTLFNRQNRGMNLQLANSPPPPPPPPPPFFGEKREAFLPPPTHWKSVYSSTNIVGDNGEALPSPPAPPIANRSTTTKVYEVLGAISLTSPPPPPPPPPPPPPLCSLDRASFTPSSISPTTSLKASPPPPPPPPFCRVQPPPPSPFSRASPTPTPPPPPSFSRTPSPPPPPPPPPSRAPPPSPPPLPPSNGAPPSPPFSRAPPPPPPPLPPSSGEPPPPPSSFSRAPPPPPPPIPPSSGAPPPPPPPPFNRAQPPSPPPLPPSSGAPPPPPPPLMSRTPPPPPPPTHGAPSPPPPPMRGAPPPPPPMNGGAPPPPPPPGGRGPPPPPLPGGRGPPPPPLPGGRAPAPPGGAPPPPPPLGSKGAVGADPRGRGRGLARPTGAGAMATRKSSFKPLHWSKVSRALQGSLWEELQRHGEPQIGQEFDVSELEKLFSANVPKPADSGGKSGSRRNSVGSKPDKVTLVDLRRAYNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKENLGKCEKFFMELMKVPRVESKLRVFSFKIQFGSQIIEFKMSLNTVNSVCEEVRKSLKVKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLAEKSPGLLDFHLDLVSLEAATKIQLKSLAEEMQAIIKGLEKVKQEFTASENDGPVSEVFRKTLKGFIDVAESEVAFVTNLYSVVGRNADALALYFGEDPARCPFEQVTATLLNFIRLFRKAHEENCKQAELEKKKAEKEAEMEKAEKAKGTNLTRKSAKDREES | 1529 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi3289g00008 | 1529 | Coils | Coil | 1484 | 1516 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 675 | 1116 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 744 | 762 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 501 | 530 | - | - | |
| Gabi3289g00008 | 1529 | Pfam | Formin Homology 2 Domain | 1113 | 1483 | IPR015425 | - | |
| Gabi3289g00008 | 1529 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1108 | 1509 | IPR015425 | - | |
| Gabi3289g00008 | 1529 | PANTHER | FORMIN-J | 1 | 830 | - | - | |
| Gabi3289g00008 | 1529 | SMART | PTEN_C2_2 | 200 | 1161 | IPR014020 | - | |
| Gabi3289g00008 | 1529 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 13 | 190 | IPR029021 | - | |
| Gabi3289g00008 | 1529 | Gene3D | Formin, FH2 domain | 1127 | 1524 | IPR042201 | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 675 | 696 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 815 | 834 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 553 | 640 | - | - | |
| Gabi3289g00008 | 1529 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 202 | 338 | IPR035892 | - | |
| Gabi3289g00008 | 1529 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 1184 | 1512 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 850 | 1088 | - | - | |
| Gabi3289g00008 | 1529 | Pfam | C2 domain of PTEN tumour-suppressor protein | 201 | 338 | IPR014020 | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 715 | 730 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 1495 | 1529 | - | - | |
| Gabi3289g00008 | 1529 | Coils | Coil | 1390 | 1410 | - | - | |
| Gabi3289g00008 | 1529 | Gene3D | - | 207 | 338 | - | - | |
| Gabi3289g00008 | 1529 | SMART | it6_source | 821 | 1529 | IPR015425 | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 563 | 619 | - | - | |
| Gabi3289g00008 | 1529 | MobiDBLite | consensus disorder prediction | 1162 | 1184 | - | - | |
| Gabi3289g00008 | 1529 | Gene3D | Protein tyrosine phosphatase superfamily | 14 | 206 | IPR029021 | - | |
| Gabi3289g00008 | 1529 | ProSiteProfiles | C2 tensin-type domain profile. | 202 | 341 | IPR014020 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi3289g00008 | Gabi-Chr3289 | 257425 | 279979 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi3289g00008 | 1 | 619 | FH2 protein (formin) Gene Family | AT5G07740 | 63.242 | 0.0 | 771 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi3289g00008 | - | - | lang:109327684 | 1076.62 |