Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3289g00007 ATGGGTTGTGTGACTTCGAAGGATGCGGTGTTGGTGACGCCAACAATTGACCTCTCGGGCGTGTTTCGGAGCAATGCGGTGGTGAACGAGTCGGAGAAAAAGAAGAAGAAGAAGAAGAAGACTGAGTCATGTAGAGCGAGTCAGAGCGAAATCGGTGAGTCTGGTAGAGCGAGTTCCAATGCCGTTGTTGCCTGCGAGACCTTGAGCTTCAGGTTAGGGGACCTGAACAAGTACGTGCAAGGCGAACACGTGGCAGCTGGCTGGCCGGCTTGGCTCAGCGCCGTCGCCTGCGAAGCCATTCACGGCTGGGTTCCGCTACGCTCCGATGCCTTTGAGAAACTCGAGAAGATAGGGCAGGGTACGTATAGCAATGTTTTTCGAGCGAGGGAGATTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGTTTTGATAATTTTGAGCCAGAGAGTGTGAGGTTCATGGCACGGGAAATAATGATTCTGAGGAGGCTTGATCATCCAAATATCATAAAGTTAGAGGGTTTGATTACTTCGAAATTGTCATGTAGCATATACCTTGTGTTTGAGTACATGGAGCATGACATTACAGGGCTCTTATATACTCCTGATATCAAGTTTACTGAACCACAGATTAAGTGCTATATGAAGCAGTTGTTATCTGGTATTGAGCATTGTCATTCGAAGGGTGTGATGCACCGTGATATCAAGGGATCAAATCTTCTGGTGAATAATAAAGGGGTTTTGAAGGTGGGGGATTTTGGATTGGCCAATTTCTCTAATTCTGGGCTGAGGCATCCCCTCACTAGTCGTGTTGTTACTTTGTGGTACCGTCCTCCGGAGCTTTTGATGGGTTCTACTGATTATGGTCCAGCTGTGGATATCTGGAGTGTTGGCTGCGTCTTCGCGGAGCTACTTGTTGGGAAGCCTATACTTCAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTCAAGCTTTGTGGCTCCCCACCTGATGAATTCTGGAAAAAGACTAAACTTCCTCATCCAACTTTGTTTAAACCACAGCAACCATATGATAGTTGCCTCCGAGATTCCTTTAAATATTTGCCTGCCGCTAGTGTAAATCTGCTACAAACTCTTCTTTCTGTCGAACCATACAAACGTGGGACTGCTACATCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCTTATGCATGTGACCCATCAAGCTTGCCGATATACCCACCCAGCAAGGAAATTGATGCAAAACACAGGGAGGAGTCAAGGAAAAAGATTGGTGGACGAGTTCGTGGAACTGAAACAAGGAAATCATCAAGAAAGTCAGTCCAAGCAGAGGATTTGGCAAGTCAAACTCAGACTTCCCAGAAGGTCAGTGATAGACCTGCCCGCATCCTTAAAGAAGGGAAGACTAACATCGGAGAGGAGGCACCAAAGCCATCCGTTGATAAACCTGAAGATGCTTCCCATATGAAGAATGCATCTCAAGGAGATATTCCCTTCTCTGGACCATTACAGGTTTCAACCTCAAGTGGCTTTGCATGGGCAAAAAGCCGGAAAGATGACACTTCAATTCGATCCCATTGTCGAACTATGTCAAGAGGACATATTTTCAATCCATCAGAAGCTTCCACACTGAATTCAAGGAACAATTTGGATACCATAAACCAGGAAAATAAGGAGTTTTGTGGGGGACGCACCAACTCTAGGGACCATGACCTATTTGAAATTTCTAAGCTTCCAATGCAGAATCAATGGATTAAGTTTGAGCGTCCAGATTCATTTGATGCTTCTGATGAGTACCACTCGCAAGAACTGTCTATGGCGCTTTATCATAGAGAAGATTCAGTATCCAAGAGAAGTAATCCGTTTTACCAGGATCAAGGAGAAAAAGTTGATTTTTCGGGACCCCTACTATCTCAAATGCACACAGTTGACGAGCTATTAGAAAAGCATGAGCGTCACATCCGGCAAACTGTCCGTAGATCATGGTTTCAAAGAGCTAAGAAGCTTGGGAAGTAA 2028 0.4527 MGCVTSKDAVLVTPTIDLSGVFRSNAVVNESEKKKKKKKKTESCRASQSEIGESGRASSNAVVACETLSFRLGDLNKYVQGEHVAAGWPAWLSAVACEAIHGWVPLRSDAFEKLEKIGQGTYSNVFRAREIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSKLSCSIYLVFEYMEHDITGLLYTPDIKFTEPQIKCYMKQLLSGIEHCHSKGVMHRDIKGSNLLVNNKGVLKVGDFGLANFSNSGLRHPLTSRVVTLWYRPPELLMGSTDYGPAVDIWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEFWKKTKLPHPTLFKPQQPYDSCLRDSFKYLPAASVNLLQTLLSVEPYKRGTATSALSSEYFKTKPYACDPSSLPIYPPSKEIDAKHREESRKKIGGRVRGTETRKSSRKSVQAEDLASQTQTSQKVSDRPARILKEGKTNIGEEAPKPSVDKPEDASHMKNASQGDIPFSGPLQVSTSSGFAWAKSRKDDTSIRSHCRTMSRGHIFNPSEASTLNSRNNLDTINQENKEFCGGRTNSRDHDLFEISKLPMQNQWIKFERPDSFDASDEYHSQELSMALYHREDSVSKRSNPFYQDQGEKVDFSGPLLSQMHTVDELLEKHERHIRQTVRRSWFQRAKKLGK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3289g00007 675 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3289g00007 675 FunFam probable serine/threonine-protein kinase At1g54610 194 433 - -
Gabi3289g00007 675 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Gabi3289g00007 675 FunFam probable serine/threonine-protein kinase At1g54610 98 193 - -
Gabi3289g00007 675 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3289g00007 675 PANTHER CELL DIVISION PROTEIN KINASE 109 399 - -
Gabi3289g00007 675 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3289g00007 675 Gene3D Phosphorylase Kinase; domain 1 98 193 - -
Gabi3289g00007 675 SUPERFAMILY Protein kinase-like (PK-like) 105 402 IPR011009 -
Gabi3289g00007 675 CDD STKc_CDK9_like 111 395 - -
Gabi3289g00007 675 Gene3D Transferase(Phosphotransferase) domain 1 194 432 - -
Gabi3289g00007 675 MobiDBLite consensus disorder prediction 463 493 - -
Gabi3289g00007 675 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Gabi3289g00007 675 MobiDBLite consensus disorder prediction 414 445 - -
Gabi3289g00007 675 MobiDBLite consensus disorder prediction 446 462 - -
Gabi3289g00007 675 MobiDBLite consensus disorder prediction 406 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3289g00007 Gabi-Chr3289 218703 224407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3289g00007 103 427 Core Cell Cycle Gene Families AT5G10270 50.440 2.97e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gabi3289g00007 Pkinase 6.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3289g00007 - - gmx:100803328 1142.49