Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3289g00001 ATGAGTTTTTCTCAAAGAAGAACAACAATCAGCACAAGAGAAGGATCATTGATGTCAGAGCAGGAAACCTATTCATGGGGCTTCCTGGTATTCTGTTTCTTGATCCTTTTCTCAGGTAAATTTGTTGCTGGGGATTCATTGGACACGGACAAACAAGTTCTACTGAAGCTGAAATCATACTTGGAAAATCAAACTCTTGCAAATAGAGGAGGATATATAAACTGGAATAAGAATAGTTCAAATCCTTGTGAATGGTCAGGAATCTCTTGCAGCCTCTTCAATGGGACAACATGGAGGGTTGTGAGTATAGACCTCTCTGCCAGTGACATAGCTGGTGAGATGTTCCAGAACTTTTCTCAGCTCACTGAGCTCACACACCTTGATATCTCTTGGAACACACTCTCTGGGGTGATTCCTGTGGACTTGAGGAGGTGCAAGAAGCTTGTGTATCTCAATCTCTCTCATAATATTCTTGAGGGGGAGCTGAATTTGACTGGCTTGACACGCTTGCAAACACTGGACTTGTCTGTTAATAGAATTTATGGGGAACTTGGGTTGAATTTCCCTGCCATTTGTGATAGTTTAGTTACTTTGAATGTTTCAGATAATTTCTTCACTGGTGGGATTGATAGATGCTTTGATCAGTGCTTGAGATTGCAGTACTTGGATTTAAGCACAAACAATGTAAGTGGGGGCTTGTGGATTGGATTTGCCAGGCTGAGAGAGTTTTCAGTTTCTGAAAACCATCTCAGTGGGGTTGTTCCTTCCCAAGCTTTTTCAGGGAATTGTAGCCTTGAAAAATTGGATCTTTCTGTAAATGGGTTTGTTGGTAAGGCCCCCAGTGAGATTGCTAGCTGCAAGAATTTAGTGATTCTTAATCTTTCTAGCAACAATTTTACTGGAGATATTCCCAGAGAAATAGGATCAATTTCAGGTCTTCAATCATTGTTCTTGCAGAACAATCGTTTTTCAAGAGATATTCCTGACACACTTTTGAACTTGACCGATTTGTTTATCTTGGATGTGAGCAGAAACAGATTTGGTGGGGAGATACAGGAGATTTTTGGGAAATTCAAGCAACTGAAGTTTCTTCTGTTGAACTCAAATTCTTATACTGGAGGATTGAATACATCAGGCATTCTTACATTGACAGACCTTTACAGGTTGGACATAAGCTTCAATAATTTTTCAGGTCCATTACCTTCAGAAATCTCTCAAATGTCTGGTCTTAAGTTCTTAACATTAACCTACAACCAGTTCACTGGACCTATTCCATCTGAATTGGGAAAATTGACTAGCCTACACGCACTTGATCTTGCCTTCAATAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTTCTCTCTTGTGGTTAATGCTTGCAGATAATGCATTAACAGGTCAAATCCCACCAGAGTTGGGAAACTGCACAAGCTTGTTATGGTTGAACCTTGCAAACAACAGATTGTCTGGAAATTTACCTTCTGAGTTAACAAAAATTGGAAGAAATGCCATGGCCACATTTGAATCAAATCGTAAGAGTCTTGGTCAAGTTGTTGCTGGCAATAGTGAATGCTTATCAATGAGGAGATGGATACCTGCTAATTACCCTCCATTCAGCTTTGTGTATACCATCCTAACAAGGAAGAATTGTAGAGCTCTTTGGGACAGATTGCTCAAAGGATATGGTATTTTCCCCATGTGCACATATGGGTCTTCTTCTATATCATCCCACATATCAGGATATGTTCAGCTAAGTGGGAACCAGCTCAGTGGTGAAATTCCTCCAGAAATTGGAACCATGCTCAACTTTAGTATGTTTCATTTGGGGGATAACAAATTCTTTGGGAAATTCCCTCCAGAGATTGGAAATTTGACTCTTGTAGTCTTGAACATGACAAGAAACAAATTTTCAGGTGAAATTCCAACTGAAATTGGCAACTTGAAGTGTCTGCAGGATCTGGATTTGTCTTGGAACAATTTCTCTGGGACATTTCCTACAAGTTTGGTCAACTTGGATGGGCTTAGCAGGTTCAACATCTCATACAATCCCTTCATATCTGGTGTAGTCCCACCATCCGGGCACTTACTTACTTTTGACAGAGACTCATATTTGGGTGACCCCCTCTTGAACCTCCCAAAGTTCTTTTATAACAGTCCAGATGGAACAAATAGGACCTATCACAAAGACCTGAAAGAGTCCACAAAATGGTCACTATTTTTGGCTATAACACTGGCTATCTTGGTCTTTGGATTTCTTTCGCTTATAGTCTATTTCTTGGTGAAGAGTCCATCTGTGGAATCAGGATTCCACTTGAGGGATAGAAAACAGGTGCATCATTCAGACAGCTCCGGATCCTCAACATGGTTATCTGATACTGTTAAGATATTCCACTTGAACAAGACAGTTTTCACACATGCTGACATATTGGAAGCAACCGGCAACTTCAGAGAGGAAAGAGTCATAGGAAAAGGTGGCTTTGGGACAGTGTATAGGGGAGTGTTCCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGCATGGAAGGTGAAAAAGAATTCAGAACTGAAATGAAGGTTCTGAGTGGTCATGGATTTGGCTGGCCTCATCCAAACCTTGTCACACTCTATGGTTGGTGCTTACATGGTTCACAGAAGATACTGGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGATCTTGTGACTGATAGAACAAAATTGACATGGAGGAGGCGCCTAGAGGTGGCAATTGATGTGGCAAGGGCACTAGTCTATTTACACCATGAATGCTACCCTTCAATAGTGCATAGAGATGTTAAGGCTAGTAATGTGTTGCTAGACAATGATGGGAAGGCCAAAGTCACAGACTTTGGACTTGCTAGAGTTGTTGATGCTGGAGATAGTCATGTGAGCACAATAGTGGCTGGCACAGTGGGGTATGTTGCACCAGAATATGGACAAACATGGAAAGCAACAACAAAAGGTGATGTATATAGTTTTGGGGTGTTGGCTATGGAGTTAGCAACAGGAAGAAGAGCAGTTGATGGAGGAGAAGAGTGTTTGGTTGAATGTGTTAAGCGTGTCATGGATTCTGGAAGACATGGTTTAAGTCACTTTGTGCCAGTTTTCTTGGTGGACTATGGGGTAGTTGAGGGTGCAAATAAGATGGGTGAGTTGCTCCAAGTTGGGGTGAAGTGTACCCATGACTCACCACAGGTTAGGCCTAACATGAAGGAAGTTCTAGCTATGCTGATTAAGATACACAACCCAAAGGGAGACTCAAATTATGGGCACTTTGTTTAG 3324 0.4161 MSFSQRRTTISTREGSLMSEQETYSWGFLVFCFLILFSGKFVAGDSLDTDKQVLLKLKSYLENQTLANRGGYINWNKNSSNPCEWSGISCSLFNGTTWRVVSIDLSASDIAGEMFQNFSQLTELTHLDISWNTLSGVIPVDLRRCKKLVYLNLSHNILEGELNLTGLTRLQTLDLSVNRIYGELGLNFPAICDSLVTLNVSDNFFTGGIDRCFDQCLRLQYLDLSTNNVSGGLWIGFARLREFSVSENHLSGVVPSQAFSGNCSLEKLDLSVNGFVGKAPSEIASCKNLVILNLSSNNFTGDIPREIGSISGLQSLFLQNNRFSRDIPDTLLNLTDLFILDVSRNRFGGEIQEIFGKFKQLKFLLLNSNSYTGGLNTSGILTLTDLYRLDISFNNFSGPLPSEISQMSGLKFLTLTYNQFTGPIPSELGKLTSLHALDLAFNSFSGPIPPSLGNLSSLLWLMLADNALTGQIPPELGNCTSLLWLNLANNRLSGNLPSELTKIGRNAMATFESNRKSLGQVVAGNSECLSMRRWIPANYPPFSFVYTILTRKNCRALWDRLLKGYGIFPMCTYGSSSISSHISGYVQLSGNQLSGEIPPEIGTMLNFSMFHLGDNKFFGKFPPEIGNLTLVVLNMTRNKFSGEIPTEIGNLKCLQDLDLSWNNFSGTFPTSLVNLDGLSRFNISYNPFISGVVPPSGHLLTFDRDSYLGDPLLNLPKFFYNSPDGTNRTYHKDLKESTKWSLFLAITLAILVFGFLSLIVYFLVKSPSVESGFHLRDRKQVHHSDSSGSSTWLSDTVKIFHLNKTVFTHADILEATGNFREERVIGKGGFGTVYRGVFPDGREVAVKKLQREGMEGEKEFRTEMKVLSGHGFGWPHPNLVTLYGWCLHGSQKILVYEYIGGGSLEDLVTDRTKLTWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDNDGKAKVTDFGLARVVDAGDSHVSTIVAGTVGYVAPEYGQTWKATTKGDVYSFGVLAMELATGRRAVDGGEECLVECVKRVMDSGRHGLSHFVPVFLVDYGVVEGANKMGELLQVGVKCTHDSPQVRPNMKEVLAMLIKIHNPKGDSNYGHFV 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3289g00001 1107 SMART serkin_6 819 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3289g00001 1107 SUPERFAMILY L domain-like 585 696 - -
Gabi3289g00001 1107 Pfam Protein kinase domain 819 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3289g00001 1107 Gene3D Ribonuclease Inhibitor 191 260 IPR032675 -
Gabi3289g00001 1107 ProSitePatterns Protein kinases ATP-binding region signature. 825 848 IPR017441 GO:0005524
Gabi3289g00001 1107 FunFam Leucine-rich repeat receptor protein kinase MSP1 782 898 - -
Gabi3289g00001 1107 Gene3D Transferase(Phosphotransferase) domain 1 900 1103 - -
Gabi3289g00001 1107 SUPERFAMILY L domain-like 98 305 - -
Gabi3289g00001 1107 Pfam Leucine rich repeat 116 156 IPR001611 GO:0005515
Gabi3289g00001 1107 ProSitePatterns Serine/Threonine protein kinases active-site signature. 941 953 IPR008271 GO:0004672|GO:0006468
Gabi3289g00001 1107 SMART LRR_typ_2 651 675 IPR003591 -
Gabi3289g00001 1107 SMART LRR_typ_2 237 261 IPR003591 -
Gabi3289g00001 1107 SMART LRR_typ_2 310 334 IPR003591 -
Gabi3289g00001 1107 SMART LRR_typ_2 455 479 IPR003591 -
Gabi3289g00001 1107 SMART LRR_typ_2 383 407 IPR003591 -
Gabi3289g00001 1107 SMART LRR_typ_2 121 145 IPR003591 -
Gabi3289g00001 1107 SUPERFAMILY L domain-like 255 514 - -
Gabi3289g00001 1107 FunFam Leucine-rich repeat receptor-like protein kinase 899 1102 - -
Gabi3289g00001 1107 FunFam Putative LRR receptor-like serine/threonine-protein kinase 358 519 - -
Gabi3289g00001 1107 SUPERFAMILY Protein kinase-like (PK-like) 800 1092 IPR011009 -
Gabi3289g00001 1107 Gene3D Ribonuclease Inhibitor 46 190 IPR032675 -
Gabi3289g00001 1107 Pfam Leucine rich repeat N-terminal domain 48 91 IPR013210 -
Gabi3289g00001 1107 CDD STKc_IRAK 825 1094 - -
Gabi3289g00001 1107 PANTHER UNNAMED PRODUCT 192 1022 - -
Gabi3289g00001 1107 Gene3D Ribonuclease Inhibitor 261 349 IPR032675 -
Gabi3289g00001 1107 Gene3D Ribonuclease Inhibitor 566 719 IPR032675 -
Gabi3289g00001 1107 Gene3D Ribonuclease Inhibitor 350 528 IPR032675 -
Gabi3289g00001 1107 Pfam Leucine Rich Repeat 194 216 IPR001611 GO:0005515
Gabi3289g00001 1107 ProSiteProfiles Protein kinase domain profile. 819 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3289g00001 1107 Gene3D Phosphorylase Kinase; domain 1 781 898 - -
Gabi3289g00001 1107 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 255 351 - -
Gabi3289g00001 1107 SMART LRR_sd22_2 121 142 - -
Gabi3289g00001 1107 SMART LRR_sd22_2 167 190 - -
Gabi3289g00001 1107 SMART LRR_sd22_2 651 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3289g00001 Gabi-Chr3289 19428 23135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3289g00001 29 1094 Receptor kinase-like Gene Family AT1G55610 30.886 1.22e-142 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Gabi3289g00001 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3289g00001 - - gmx:100813425 1701.41