Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3288g00001 ATGAATATGCTTAGAGAGGAGGAGCCCTTAAGCCATAACCAGAAGAACTACTTTTATAAAAATACTGTGTCCTCATCAGAGTACTCATTTCCATATAAATTCTCTTCACCACAGCCACATACTGAGGTTGATCGGTCTCCACCATCCCCGGACCTTACCGTAGTAAAGAAGCTTAATCACAATGCCAGTGAACGTGATCGTCGCAAGAAGATCAATCGCTTGATTACTTCACTTGGTTCACTTCTTCCGGTGGCAGATCAAACGAAAAAAATGAGCATTCCGGACACAATTTCGCGAGTCCTAAAATACATACCTCAGTTACAACACGAGGTGGAAGGACTAACTAAGAAAAAAGAGGAGCTTCTATCGAAGATTTCCAAGCAAGGAGATGCAGTGAAGAAACAATCTCAAAGGAAGATTTCCCAACTAAATTCTGTTTTTGTAGTTTCAGCAACCAGGCTCAACGATAACGAGGCTGCTATTCAGATTTCATCTTACGAAGTTTACAAGACTCCACTATCTGAGATCTTGCTGTTTTTAGAGAATAATGGGTTTTTTCTGCTAAATGTTTCTTCCTATGAAACCTATGGAGGGAGGGTCTTCTATAACTTGCATTTACAGGTGAAAAAAACTCATAGGTTAGAGTCTGAGAATATTCTGACTAAGCAATAG 672 0.3988 MNMLREEEPLSHNQKNYFYKNTVSSSEYSFPYKFSSPQPHTEVDRSPPSPDLTVVKKLNHNASERDRRKKINRLITSLGSLLPVADQTKKMSIPDTISRVLKYIPQLQHEVEGLTKKKEELLSKISKQGDAVKKQSQRKISQLNSVFVVSATRLNDNEAAIQISSYEVYKTPLSEILLFLENNGFFLLNVSSYETYGGRVFYNLHLQVKKTHRLESENILTKQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3288g00001 223 MobiDBLite consensus disorder prediction 30 52 - -
Gabi3288g00001 223 Gene3D - 52 144 IPR036638 GO:0046983
Gabi3288g00001 223 Coils Coil 104 124 - -
Gabi3288g00001 223 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 42 207 - -
Gabi3288g00001 223 FunFam Transcription factor ORG2 51 145 - -
Gabi3288g00001 223 Pfam Helix-loop-helix DNA-binding domain 56 108 IPR011598 GO:0046983
Gabi3288g00001 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 55 107 IPR011598 GO:0046983
Gabi3288g00001 223 SMART finulus 61 113 IPR011598 GO:0046983
Gabi3288g00001 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 125 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3288g00001 Gabi-Chr3288 27434 28719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3288g00001 42 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 50.595 3.72e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3288g00001 HLH 5.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3288g00001 - - gmx:100803424 256.144