Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3285g00002 ATGTTTTCAAAATATGATTTTCTGAAGGATGTCAATCCTGCCAAGGAGGACTGGAGGATTACGGTGAAGGTGGTTCGGGCTTGGAAAGTTCCGAACTATCAATGTAGAGATTTTGACGACAATGTTGAAATGGTTTTATTGGATGAACAGGGTGGTAGGATCCACGCCACTGTCAAAGGTTCTTTGCCGGTGCGGAAGAAAATCCATGAAGGAGAGGGTCACAAGCTGGAATGCACTTTTTGGGAGCATTATGTGGATGAGGTGCAATCATTTTTGGAAAACAGCGACACTCCTCATAACATCTTAATAGTTCAGCTGGGAAGGATCAAATATTTTAGGGGTAAGGTCGGTTTAACCAATACAAAATACACAACAAAGATTGTCATTGATTCAAAGGTGCCAGAGATTGTTGAGTTCAAAAAACGTCTTTCAACTGATGGTGTGGAAAGTAGTATGAGGTTGACTCAGTTGTCTACTCAGTCCTCATATTCGTTCGAAAATGATTTTCTTAAGGAGACTGAAAAGAAGTCTATCAGTGATGTTAAGCTTTGTGGTGAGGTTACGACATGCATCACGTATGGGACTATACAATCTATTGAGAGCAAATACAACTGGTGGTACAAGTCTTGCAAGAAATGTCCATTTTCTGTTTGTGAGGATTTTGATAAGTGGTACTGTAAGAATTGCCAAAAATATTGGGATGATTATTATCCAAGATTTAGTGTTCAGGTCAGAGTTGTGGATAACACTGATTCTGCATCATTTCTTCTGTTAGATCGAGACTGTGTTACATTGTTGGGAATATCTGCTGGTGAACCGCGCGAGCGACATTTTAAGAGGGGTGCGGATTTGGATCAATTTCCAGAAGAACAAAATGTTTTGAATGAGAAGTCAATGCTGTTTAAGATAAATGTGAAGCAGAAAGATCTAAACTCAATGTTCATTAAGTCTCTGATCGATCCAAATGAGGAAACAAATTTTGATACTGCTCGCGAAAACAAAATTGTATCGTCGGAACCTGAAAAGGCTGCGGATGTTAAGAGTCAGACCTGTGATAGTGCTGACGTTGGTGATGTTTCTCTTACTATGTTGACACCAATGATTAATTCTCATTGTTCTATTGCTGGAGAATTTAATTTTTCAGCTGTCCGAACTGCGAAAGAAATAAAGCTTGAAAAGGAGTTACATATTTTCTGA 1197 0.3901 MFSKYDFLKDVNPAKEDWRITVKVVRAWKVPNYQCRDFDDNVEMVLLDEQGGRIHATVKGSLPVRKKIHEGEGHKLECTFWEHYVDEVQSFLENSDTPHNILIVQLGRIKYFRGKVGLTNTKYTTKIVIDSKVPEIVEFKKRLSTDGVESSMRLTQLSTQSSYSFENDFLKETEKKSISDVKLCGEVTTCITYGTIQSIESKYNWWYKSCKKCPFSVCEDFDKWYCKNCQKYWDDYYPRFSVQVRVVDNTDSASFLLLDRDCVTLLGISAGEPRERHFKRGADLDQFPEEQNVLNEKSMLFKINVKQKDLNSMFIKSLIDPNEETNFDTARENKIVSSEPEKAADVKSQTCDSADVGDVSLTMLTPMINSHCSIAGEFNFSAVRTAKEIKLEKELHIF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3285g00002 398 PANTHER OS03G0429900 PROTEIN 8 349 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi3285g00002 398 Gene3D - 40 154 IPR012340 -
Gabi3285g00002 398 SUPERFAMILY Nucleic acid-binding proteins 6 64 IPR012340 -
Gabi3285g00002 398 CDD RPA1_DBD_B_like 67 143 - -
Gabi3285g00002 398 CDD RPA1_DBD_C 190 313 IPR047192 -
Gabi3285g00002 398 SUPERFAMILY Nucleic acid-binding proteins 174 314 IPR012340 -
Gabi3285g00002 398 SUPERFAMILY Nucleic acid-binding proteins 68 148 IPR012340 -
Gabi3285g00002 398 Pfam Replication factor-A C terminal domain 192 311 IPR013955 -
Gabi3285g00002 398 Gene3D - 156 330 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3285g00002 Gabi-Chr3285 37049 39513 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3285g00002 89 312 Core DNA Replication Machinery Family AT5G08020 24.153 9.06e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3285g00002 - - adu:107490971 193.741