Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3282g00024 ATGAAGATTCAGTGCAACGTGTGTGAAGCTGCAGAGGCCAAGGTTCTATGCTGTGCTGATGAGGCGGCGCTGTGTTGGGAATGTGATGAGAAGGTTCATGCAGCGAACAAGCTCGCCAGCAAGCACCAGAGAGTTCCTCTTTCTATCTCTTCCTCTCATATGCCCAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGTCTGGAGGATCGGGCTTTGCTCTGCAGAAAATGTGATTTGGCAATACACACTGCAAATGCTTATGTCTCTGGTCATCAAAGGTTTCTTCTCACTGGTGTAAGAGTAGGTCTTGAAGCCACTGAGCCTGGTGCTTCTTCAACTTCTCTGAAGTCAGATTCTGGGGAGAAAATTTCGGATACAAAGTCGTCTTCTGTCTCTAGAAAGGTTTCTACAATGCCCCAGTCATCAGATTACAATGAAGTGTTACCCATTGGAGGAGCTGGCGAGTTTCCTCCAGCTAAGGTATCTTATGGTGGTGGTTCTACAGCTGGAAACATCTCACAGTGGCAGATTGATGAATTTCTTGGCCTAAATGATTTCAGTCAGGATTATAATTACATGGAAGGATCATCAAGGGCTGACAGTGATAAGCTTGGGGATTCTGATTCTCCTGTTTTAAGATCCAGTGAAGAGGAAATGGATGATGATGGCTACTTGGGACGTGTTCCGGATTCATCCTGGACAGTTCCTCAGATTCCTTCCCCTCCTACAGCTTCAGGGTTATACTGGCCCAAAGACCCTCAACATTTACCTGATAGTGCTCTCTTTGTTCCTGACATACACTTTTCTAGCATGCAACAATCTCAGAATAGTAGTGTGTTTTCAAGACGGAGGAGGCATTTTTGA 873 0.4502 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSISSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSTSLKSDSGEKISDTKSSSVSRKVSTMPQSSDYNEVLPIGGAGEFPPAKVSYGGGSTAGNISQWQIDEFLGLNDFSQDYNYMEGSSRADSDKLGDSDSPVLRSSEEEMDDDGYLGRVPDSSWTVPQIPSPPTASGLYWPKDPQHLPDSALFVPDIHFSSMQQSQNSSVFSRRRRHF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3282g00024 290 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Gabi3282g00024 290 CDD Bbox1_BBX-like 5 47 - -
Gabi3282g00024 290 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Gabi3282g00024 290 MobiDBLite consensus disorder prediction 202 228 - -
Gabi3282g00024 290 Gene3D Classic Zinc Finger 1 92 - -
Gabi3282g00024 290 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gabi3282g00024 290 MobiDBLite consensus disorder prediction 197 254 - -
Gabi3282g00024 290 MobiDBLite consensus disorder prediction 110 147 - -
Gabi3282g00024 290 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
Gabi3282g00024 290 FunFam B-box zinc finger protein 22 1 93 - -
Gabi3282g00024 290 CDD Bbox1_BBX-like 56 99 - -
Gabi3282g00024 290 SMART bboxneu5 4 47 IPR000315 GO:0008270
Gabi3282g00024 290 SMART bboxneu5 52 99 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3282g00024 Gabi-Chr3282 254728 258230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3282g00024 1 288 C2C2-CO-like Transcription Factor Family AT1G78600 49.240 3.59e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Gabi3282g00024 zf-B_box 9.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3282g00024 - - gmx:100790959 488.804