Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3282g00013 ATGGTTGGATTCCATAGCGACCATATGCATGGGAACAAGTATAATGGTAATTCTAATAGTATACCGGGTCGTGTTGAACGACTTGTGAGAGAAAGAGAGCTAAGAAGAAGCGGCAGGGCATCTCTTTCCAATGAGTCTCCTGATAATATTAATAATAATGGGGTTACTGAATCTTTTGAGCATGATCTGTTCTTAAGAGAAGACAATAACTCAGGTGCTTATGTTGAACGACTCCAGAACGGGGCGGCAGCAGCAAGGGCTCTTAGTGAGACATGCGAAAGGGAAGATGGGAATCTTTTTAGACAACGGCTTTTGGTGGTGGCCAATAGGCTGCCAGTCTCAGCAGTTAGGAGGGGTGAGGATTCGTGGTCTTTGGAAATGAGTGCTGGCGGCCTGGTGACGGCTCTTTTAGGTGTGAAGGAGTTTGAGGCGAGGTGGATAGGTTGGGCCGGTGTCAATGTGCCCGATGAGATTGGGCAGAAGGCACTTACTAAAGCATTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGCAACAACATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGTCTTGCTACCACACGTAGTTTTCAGTCTCAGTTTGTAGCATATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTGGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTGAAGAAATATAACAGCAAAATGAAAGTAGGCTGGTTTCTCCACACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTTTTCACACCTATGATTATGCACGACATTTTGTTAGTGCATGTACTCGCATCCTTGGACTTGAGGGAACACCTGAAGGGGTTGAGGATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATTGGTATAGACTCGCAACGATTCATACGTGCACTTGACCTTCCTCCAGTCCAGGAACACATCAAAGAATTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTAGCATTTGAAAAATTCTTGGAAGAGAATGCTTCTTGGCGTGATAAAGTCGTTCTGCTTCAAATTGCTGTGCCAACAAGAACGGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGCCGCATCAATGGCAGATTTGGATCATTGACTGCTGTTCCTATACATCACCTGGACCGCTCTCTTGATTTTCATGCACTGTGTGCGTTGTATGCTGTTACGGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGAGTTCTCATTCTTAGCGAATTTGCTGGTGCTGCACAGTCTCTTGGTGCTGGGGCAATTCTGGTCAACCCCTGGAACATCACAGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGCCTTCTGCGGAAAGAGAGAAGAGACATAGGCATAACTTTCTTCATGTAAAAACCCACACTGCCCAGGAATGGGCAGAAACTTTTGTAAGCGAACTGAATGATACTGTTGTTGAGGCACAGCTAAGGACTAAACAAGTTCCACCACGGCTCCCAACCACGACTGCAATTGAGCGATACCTACAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACTTTAACTGAACCAGTCGAGAAAAAAGGTGATCAGTATAAAGAAATGGAACTCGCAGTGCATCCAGAACTGAAACAACCCTTGACAGCACTTTGCTGCGACCCGAAGACAACAGTTGTTGTGCTTAGTGGAAGTAAAAGAACAATTCTAGATGAAAACTTTAAAGAATATGACATGTGGCTGGCAGCAGAGAATGGGATGTTTTTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCAGAGCAACTGAATATGGAGTGGGTTGATAGCGTGAAGCAAGTTTTTGAATACTTCAAAGAAAGAACACCTCGGTCACATTTCGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAAACACGCAGATGTTGAGTTTGGAAGACTCCAAGCAAGGGACATGCTTCAGCATCTCTGGACAGGTCCAATTTCTAATGCACCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGCTGGCGTTACGAAGGGAGCAGCTATTGACCGCATCCTTGGTGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTATGTTCTGTGCGTAGGACATTTTCTGGCGAAGGATGAAGATATATATTCCTTTTTTGAGCCAGAGCTTCCTTATCTTGGTGTGGGTTTTACACGAAGTAAGGCAACAGATGGAGTTAAGTATCCTGTTGAGAGGACATCGTCCTTGAAGATCCCAGCTGGTAAAAATGGAACAAAGTCATCTCATAATAAGGGACAACGTCCTTTGTCAAATTCTGAGAAAAAAACAAATAATCATATCTGCCGTGCACCAAAGCGGCAAGCTCCTGAAAAGGTCTCTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCATGTTCTGTTGGACGAACTCAAACAAATGCTCGCTATACGCTTGGATCATCAGATGACGTTGTTGTATTCCTCAAGGAACTAGCTGATGCATCTTCAAACTCTTTATTACCTAGTGTCTGA 2826 0.4349 MVGFHSDHMHGNKYNGNSNSIPGRVERLVRERELRRSGRASLSNESPDNINNNGVTESFEHDLFLREDNNSGAYVERLQNGAAAARALSETCEREDGNLFRQRLLVVANRLPVSAVRRGEDSWSLEMSAGGLVTALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFVAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKKYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSQRFIRALDLPPVQEHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENASWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMPSAEREKRHRHNFLHVKTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPTTTAIERYLQSTNRLLILGFNGTLTEPVEKKGDQYKEMELAVHPELKQPLTALCCDPKTTVVVLSGSKRTILDENFKEYDMWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKQVFEYFKERTPRSHFEEREASLVWNYKHADVEFGRLQARDMLQHLWTGPISNAPVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCVGHFLAKDEDIYSFFEPELPYLGVGFTRSKATDGVKYPVERTSSLKIPAGKNGTKSSHNKGQRPLSNSEKKTNNHICRAPKRQAPEKVSWNVLDLKKENYFSCSVGRTQTNARYTLGSSDDVVVFLKELADASSNSLLPSV 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3282g00013 941 Gene3D Glycogen Phosphorylase B; 350 553 - -
Gabi3282g00013 941 CDD HAD_TPP 601 818 - -
Gabi3282g00013 941 Gene3D - 603 784 IPR023214 -
Gabi3282g00013 941 CDD GT20_TPS 103 568 IPR001830 GO:0003824|GO:0005992
Gabi3282g00013 941 SUPERFAMILY HAD-like 600 929 IPR036412 -
Gabi3282g00013 941 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 95 931 IPR001830 GO:0003824|GO:0005992
Gabi3282g00013 941 Pfam Glycosyltransferase family 20 103 568 IPR001830 GO:0003824|GO:0005992
Gabi3282g00013 941 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3282g00013 941 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 103 568 IPR012766 GO:0003825|GO:0005992
Gabi3282g00013 941 Pfam Trehalose-phosphatase 606 826 IPR003337 GO:0003824|GO:0005992
Gabi3282g00013 941 NCBIfam trehalose-phosphatase 599 813 IPR003337 GO:0003824|GO:0005992
Gabi3282g00013 941 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 102 571 - -
Gabi3282g00013 941 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 350 553 - -
Gabi3282g00013 941 MobiDBLite consensus disorder prediction 842 874 - -
Gabi3282g00013 941 Gene3D Glycogen Phosphorylase B; 95 349 - -
Gabi3282g00013 941 Gene3D - 690 770 - -
Gabi3282g00013 941 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 690 770 - -
Gabi3282g00013 941 MobiDBLite consensus disorder prediction 847 873 - -
Gabi3282g00013 941 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 95 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3282g00013 Gabi-Chr3282 168806 188528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3282g00013 9 935 Trehalose Biosynthesis Gene Families AT1G78580 77.037 0.0 1476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3282g00013 K16055 - gmx:100789554 1598.95