Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3282g00012 ATGGTTGGATTCCATAGCGACCATATGCATGGGAACAAGTATAATGGTAATTCTAATAGTATACCGGGTCGTGTTGAACGACTTGTGAGAGAAAGAGAGCTAAGAAGAAGCGGCAGGGCATCTCTTTCCAATGAGTCTCCTGATAATATTAATAATAATGGGGTTACTGAATCTTTTGAGCATGATCTGTTCTTAAGAGAAGACAATAACTCAGGTGCTTATGTTGAACGACTCCAGAACGGGGCGGCAGCAGCAAGGGCTCTTAGTGAGACATGCGAAAGGGAAGATGGGAATCTTTTTAGACAACGGCTTTTGGTGGTGGCCAATAGGCTGCCAGTCTCAGCAGTTAGGAGGGGTGAGGATTCGTGGTCTTTGGAAATGAGTGCTGGCGGCCTGGTGACGGCTCTTTTAGGTGTGAAGGAGTTTGAGGCGAGGTGGATAGGTTGGGCCGGTGTCAATGTGCCCGATGAGATTGGGCAGAAGGCACTTACTAAAGCATTGGCTGAAAAGAGGTGTATCCCTGTATTTCTTGATGAAGAGATTGTTCATCAATATTATAATGGCTATTGCAACAACATTTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGACCGTCTTGCTACCACACGTAGTTTTCAGTCTCAGTTTGTAGCATATCAGAAAGCAAATCAAATGTTTGCTGATGTTGTAAACAAGCACTATGAAGAGGGTGATGTGGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCACAATGCTTGAAGAAATATAACAGCAAAATGAAAGTAGGCTGGTTTCTCCACACCCCATTTCCATCTTCTGAAATTCACAGGACACTGCCATCTCGTTCAGAGCTCCTGCATGCTGTTCTTGCAGCTGATTTGGTTGGTGCATGTACTCGCATCCTTGGACTTGAGGGAACACCTGAAGGGGTTGAGGATCAAGGGAAGCTGACTCGAGTTGCTGCATTTCCAATTGGTATAGACTCGCAACGATTCATACGTGCACTTGACCTTCCTCCAGTCCAGGAACACATCAAAGAATTACAAGAAAGATTTAAAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATCAAAGGAATCCCTCAAAAAATTCTAGCATTTGAAAAATTCTTGGAAGAGAATGCTTCTTGGCGTGATAAAGTCGTTCTGCTTCAAATTGCTGTGCCAACAAGAACGGATGTTCCTGAGTATCAAAAGCTTACAAGCCAGGTCCATGAAATTGTTGGCCGCATCAATGGCAGATTTGGATCATTGACTGCTGTTCCTATACATCACCTGGACCGCTCTCTTGATTTTCATGCACTGTGTGCGTTGTATGCTGTTACGGATGTAGCACTTGTCACATCTTTGAGGGATGGAATGAATCTTGTCAGTTACGAATTTGTGGCCTGCCAAGATAAAAAGAAAGGAGTTCTCATTCTTAGCGAATTTGCTGGTGCTGCACAGTCTCTTGGTGCTGGGGCAATTCTGGTCAACCCCTGGAACATCACAGAAGTTGCTGCTGCAATTGCCAAGGCTCTGAATATGCCTTCTGCGGAAAGAGAGAAGAGACATAGGCATAACTTTCTTCATGTAAAAACCCACACTGCCCAGGAATGGGCAGAAACTTTTGTAAGCGAACTGAATGATACTGTTGTTGAGGCACAGCTAAGGACTAAACAAGTTCCACCACGGCTCCCAACCACGACTGCAATTGAGCGATACCTACAGTCAACTAATCGATTGCTTATTTTGGGATTCAATGGAACTTTAACTGAACCAGTCGAGAAAAAAGGTGATCAGTATAAAGAAATGGAACTCGCAGTGCATCCAGAACTGAAACAACCCTTGACAGCACTTTGCTGCGACCCGAAGACAACAGTTGTTGTGCTTAGTGGAAGTAAAAGAACAATTCTAGATGAAAACTTTAAAGAATATGACATGTGGCTGGCAGCAGAGAATGGGATGTTTTTAAACCCTTCAAAGGGAGAATGGATGACAACAATGCCAGAGCAACTGAATATGGAGTGGGTTGATAGCGTGAAGCAAGTTTTTGAATACTTCAAAGAAAGAACACCTCGGTCACATTTCGAAGAAAGGGAAGCTTCACTTGTATGGAATTACAAACACGCAGATGTTGAGTTTGGAAGACTCCAAGCAAGGGACATGCTTCAGCATCTCTGGACAGGTCCAATTTCTAATGCACCAGTTGAAGTTGTTCAAGGGAGCCGATCTGTTGAGGTGCGAGCTGCTGGCGTTACGAAGGGAGCAGCTATTGACCGCATCCTTGGTGAGATAGTCCACAGTAAATCCATGACAACACCAATTGATTATGTTCTGTGCGTAGGACATTTTCTGGCGAAGCAGGATGAAGATATATATTCCTTTTTTGAGCCAGAGCTTCCTTATCTTGGTGTGGGTTTTACACGAAGTAAGGCAACAGATGGAGTTAAGTATCCTGTTGAGAGGACATCGTCCTTGAAGATCCCAGCTGGTAAAAATGGAACAAAGTCATCTCATAATAAGGGACAACGTCCTTTGTCAAATTCTGAGAAAAAAACAAATAATCATATCTGCCGTGCACCAAAGCGGCAAGCTCCTGAAAAGGTCTCTTGGAATGTCCTTGACCTCAAGAAGGAGAATTACTTCTCATGTTCTGTTGGACGAACTCAAACAAATGCTCGCTATACGCTTGGATCATCAGATGACGTTGTTGTATTCCTCAAGGAACTAGCTGATGCATCTTCAAACTCTTTATTACCTAGTGTCTGA 2793 0.4364 MVGFHSDHMHGNKYNGNSNSIPGRVERLVRERELRRSGRASLSNESPDNINNNGVTESFEHDLFLREDNNSGAYVERLQNGAAAARALSETCEREDGNLFRQRLLVVANRLPVSAVRRGEDSWSLEMSAGGLVTALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFVAYQKANQMFADVVNKHYEEGDVVWCHDYHLMFLPQCLKKYNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHAVLAADLVGACTRILGLEGTPEGVEDQGKLTRVAAFPIGIDSQRFIRALDLPPVQEHIKELQERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENASWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGSLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDKKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAKALNMPSAEREKRHRHNFLHVKTHTAQEWAETFVSELNDTVVEAQLRTKQVPPRLPTTTAIERYLQSTNRLLILGFNGTLTEPVEKKGDQYKEMELAVHPELKQPLTALCCDPKTTVVVLSGSKRTILDENFKEYDMWLAAENGMFLNPSKGEWMTTMPEQLNMEWVDSVKQVFEYFKERTPRSHFEEREASLVWNYKHADVEFGRLQARDMLQHLWTGPISNAPVEVVQGSRSVEVRAAGVTKGAAIDRILGEIVHSKSMTTPIDYVLCVGHFLAKQDEDIYSFFEPELPYLGVGFTRSKATDGVKYPVERTSSLKIPAGKNGTKSSHNKGQRPLSNSEKKTNNHICRAPKRQAPEKVSWNVLDLKKENYFSCSVGRTQTNARYTLGSSDDVVVFLKELADASSNSLLPSV 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3282g00012 930 MobiDBLite consensus disorder prediction 831 863 - -
Gabi3282g00012 930 Pfam Glycosyltransferase family 20 103 556 IPR001830 GO:0003824|GO:0005992
Gabi3282g00012 930 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 678 758 - -
Gabi3282g00012 930 Gene3D Glycogen Phosphorylase B; 338 541 - -
Gabi3282g00012 930 NCBIfam trehalose-phosphatase 587 800 IPR003337 GO:0003824|GO:0005992
Gabi3282g00012 930 SUPERFAMILY HAD-like 588 919 IPR036412 -
Gabi3282g00012 930 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 95 337 - -
Gabi3282g00012 930 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 95 920 IPR001830 GO:0003824|GO:0005992
Gabi3282g00012 930 Gene3D - 591 772 IPR023214 -
Gabi3282g00012 930 MobiDBLite consensus disorder prediction 1 24 - -
Gabi3282g00012 930 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 103 556 IPR012766 GO:0003825|GO:0005992
Gabi3282g00012 930 CDD HAD_TPP 589 807 - -
Gabi3282g00012 930 Gene3D Glycogen Phosphorylase B; 95 337 - -
Gabi3282g00012 930 Gene3D - 678 758 - -
Gabi3282g00012 930 CDD GT20_TPS 103 556 IPR001830 GO:0003824|GO:0005992
Gabi3282g00012 930 MobiDBLite consensus disorder prediction 836 862 - -
Gabi3282g00012 930 Pfam Trehalose-phosphatase 594 815 IPR003337 GO:0003824|GO:0005992
Gabi3282g00012 930 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 338 541 - -
Gabi3282g00012 930 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 102 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3282g00012 Gabi-Chr3282 168806 188528 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3282g00012 9 924 Trehalose Biosynthesis Gene Families AT1G78580 75.687 0.0 1436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3282g00012 K16055 - gmx:100789554 1558.5