Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00055 ATGATAGTTAAGCGGATTATGAAAACTGAAATGCAGAACCTGAAATGGTGTAAGCTAGAAGAAGACACCAATTCCAAGGACAATGAGTGTTCGTCGATTCAGAAGAAGCGGAGGATGAATGAAAACTTGAGTTGTGGTTCTGGGTCTAGGTCCAGCGAAGGATGGAATTGGGGTGGTGAGGTCCATTCCCATGGCCATTCAAATTCTATGGAGTTGAATGGTGCAAGTAGGAAAACACTAGAGTTGGCCTCAGAATCAGAATGGGTTCGACCTCCATTGTTGCGGTCATCGAGAGGTCGAGCTCAGATGCTTCCATCCAGGTTCAGTGACTCGGTTCTTGATACATGGAAAAGTAATGGACGAGTAAAAAAAGATAGCAAACGCTTCGGGTTTGAAGATGATATTGCTTTAGAAGATATTGGAACGGGATTTGTAAAACAGGGGAAGAGAAATAAATGTGGCTCAAAAAGTTCTCTTTGTTTTCCATATTCTGCTGAAATGAAGGCGGAAACAGAATCGGGTGGCTTAGGTTTCAATGATTTTGATTACAAGAAGCTTAAAACGACAGTTAATGGGAGTCGTTCATTATTGGTTAAAAAAGAGAGTAATGCTTCTGGACTTGGTTTTGATCCTGAGGGTGTAGACCTAAAGGAAAAGCCTAATGGAAACGCTAAAAAGAGGGAGGGCATTTACAAACCAGAGGATTTTGCTTTGGGTGATGTAGTTTGGGCAAAATGTGGGAAGCAATATCCTGCTTGGCCTGCTGTGGTGATTGATCCCATCTTGCAAGCTCCCAAGTCCGTCCTCAACTGTTGTGTTCCCGGTGCAATTTGCGTTATGTTCTTTGGTTATTCAAAAAACGGAAAGCAAAGGGACTATGCATGGGCGAAGCAGGGGATGATATTCCCCTTTTTGGAATTCATGGATAGATTCCAGCGGCAGACTCAATTGTACAAGAGCAAACCGAGTGACTTTCACATGGCAATGGAGGAGGCAATGTTGGCAGAAGATGGCATTTTGGACTCACACTTGGGAGCTGAGCAAATTACTGATGTTCAGGCTCATTCCAGTGGGCTTACGGAGTATGCAGGTTCCTATGTTGATCAGGGTACAATATCTTGTGCTGGCTGTGGTTTGATGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTTTGCTCCTCAGCATTATTGTAAACCCTGTGCGAAGTTACTAAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGGTGGGGATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACTTTTCAAGGATCTGGAAAAAACAGACTACTATTGCCCAGATTGCAAGGGAAAATTCAATTGCAAATTATCAGCATCACAAACATACAAGTCAAAAATCAAATCAATAGAGAATAGCCTAAAACCTGAGTTGCCTGAAAATCTGGCGGTGGTGTGCAATGGCATGAAAGGAATTTATATTCCAAAGCTTCATTTAGTTATGTGCAAGTGTGGCTCGTGTGGTTCAAGGAAGCAGACCCCGATTGAATGGGAAGGGCATGCAGGTTGCAGAGCCAAAAAATGGAAATATAGTGTGAAAGTGGAAAGCACAATGCAACCGCTGATAAAATGGGTTCTCCAGATCACGAAGCACAAATCTCAACCTGGTATTCCTCTACGGTTAGATCAGCAAAAGGTGCTCTCCTTTTTGCAAGAGAAGTATGAGCCTGTTTATGCAAGATGGACAACAGAAAGATGTGCCATTTGCAGATGGGTTGAAGACTGGGAAGATAACAAAATAATTATCTGTAACAGGTGCCAAATTGCAGTTCACCAAGAATGCTATGGGGCAAAGAATGTTCAGTTTACTTCCTGGGTTTGCAGAGTCTGTGAAACTCCTGATGTTGAGAGGGAGTGTTGCCTCTGTCCAGTAAAAGGTGGTGCTTTGAAGCCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCGGCCTGAAGTTCTTTTCCAAAACCATGAGGCAATGGAACCCGCCACTGGAATCCTTAAGATTCCATCTAATTCCTTTTTGAAG 2124 0.428 MIVKRIMKTEMQNLKWCKLEEDTNSKDNECSSIQKKRRMNENLSCGSGSRSSEGWNWGGEVHSHGHSNSMELNGASRKTLELASESEWVRPPLLRSSRGRAQMLPSRFSDSVLDTWKSNGRVKKDSKRFGFEDDIALEDIGTGFVKQGKRNKCGSKSSLCFPYSAEMKAETESGGLGFNDFDYKKLKTTVNGSRSLLVKKESNASGLGFDPEGVDLKEKPNGNAKKREGIYKPEDFALGDVVWAKCGKQYPAWPAVVIDPILQAPKSVLNCCVPGAICVMFFGYSKNGKQRDYAWAKQGMIFPFLEFMDRFQRQTQLYKSKPSDFHMAMEEAMLAEDGILDSHLGAEQITDVQAHSSGLTEYAGSYVDQGTISCAGCGLMLPCKTMKKIKDSSFAPQHYCKPCAKLLKSKQYCGICKKIWHHSDGGDWVCCDGCNVWVHAECDKISSKLFKDLEKTDYYCPDCKGKFNCKLSASQTYKSKIKSIENSLKPELPENLAVVCNGMKGIYIPKLHLVMCKCGSCGSRKQTPIEWEGHAGCRAKKWKYSVKVESTMQPLIKWVLQITKHKSQPGIPLRLDQQKVLSFLQEKYEPVYARWTTERCAICRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVLFQNHEAMEPATGILKIPSNSFLK 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00055 708 SUPERFAMILY FYVE/PHD zinc finger 598 661 IPR011011 -
Gabi3281g00055 708 SMART PHD_3 412 464 IPR001965 -
Gabi3281g00055 708 SMART PHD_3 599 645 IPR001965 -
Gabi3281g00055 708 ProSiteProfiles Zinc finger PHD-type profile. 410 466 IPR019787 -
Gabi3281g00055 708 Pfam PHD-zinc-finger like domain 652 704 - -
Gabi3281g00055 708 Pfam PWWP domain 239 335 IPR000313 -
Gabi3281g00055 708 Pfam PHD-finger 612 645 - -
Gabi3281g00055 708 ProSitePatterns Zinc finger PHD-type signature. 600 644 IPR019786 -
Gabi3281g00055 708 ProSiteProfiles Zinc finger PHD-type profile. 597 647 IPR019787 -
Gabi3281g00055 708 Pfam PHD-finger 412 465 IPR019787 -
Gabi3281g00055 708 CDD PHD_TCF19_like 413 463 - -
Gabi3281g00055 708 ProSiteProfiles Extended PHD (ePHD) domain profile. 650 708 IPR034732 -
Gabi3281g00055 708 Gene3D - 231 338 - -
Gabi3281g00055 708 SMART PWWP_4 236 305 IPR000313 -
Gabi3281g00055 708 SUPERFAMILY FYVE/PHD zinc finger 410 471 IPR011011 -
Gabi3281g00055 708 CDD PWWP_AtATX3-like 239 338 - -
Gabi3281g00055 708 ProSiteProfiles PWWP domain profile. 238 307 IPR000313 -
Gabi3281g00055 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 469 IPR013083 -
Gabi3281g00055 708 PANTHER PHD FINGER PROTEINS 70 442 - -
Gabi3281g00055 708 CDD PHD_ATX3_4_5_like 599 644 IPR042011 -
Gabi3281g00055 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 651 IPR013083 -
Gabi3281g00055 708 SUPERFAMILY Tudor/PWWP/MBT 230 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00055 Gabi-Chr3281 505924 510515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00055 376 437 EF-hand Containing Proteins AT5G28340 59.677 8.06e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi3281g00055 PWWP 2e-16 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00055 - - gmx:100793624 940.643