Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00048 ATGGAATCGAGTAGCATTGATAGCAATGTATTATCGTTGACTATGATGGAAGTGGATGAGCATCCCCATCAGTTTTCTTCAAACTCGAAGCCACATAACAATGGTCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCAGTTTGCACCAATTCAATGTACCCTCCTATCCATCAGTGCCACAATGGGCATACCCTTTGTTCAACTTGTAAGACAAGGGTCCACAACCGATGCCCAACCTGCAGGCAGGAACTCGGTGATATAAGGTGTCTGGCATTGGAGAAGATAGCAGAATCACTTGAACTGCCTTGCAGATACATCTCTCTTGGTTGTCCAGAGATATTTCCCTATTACAGCAAGCTCAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCTGGGTCAGACTGCTCTATTGTTGGGGATATTCCATACCTTGTTGCTCATTTAAGGGACGACCACAGGGTTGATATGCATTCTGGATGCACTTTTAACCATCGTTATGTCAAGTCTAATCCCCTGGAAGTAGAAAATGCTACATGGATGCTAACGGTTTTCCATTGTTTTGGTCAGTATTTTTGCCTCCATTTCGAAGCCTTCCAGCTTGGTATGGCTCCTGTGTACATGGCATTCCTCCGATTCATGGGTGATGAAAGAGAGGCCAGGAACTACAACTACAACTTGAAGGTAGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCACGAAGCATTAGAGATAGCCATAAGAAAGTAAGAGACAATCATGATGGCCTCATCATATACCGTAACATGGCGCTTTTCTTCTCAGGAGGGGACAGGAAAGGGTTGAAGCTAAGAGTAACAGGAAGGATATGGAAAGAACAGAAAAACCCTGAAGCTGGAGTGTGCATACCCAACCTGTTTAGCTAG 930 0.4462 MESSSIDSNVLSLTMMEVDEHPHQFSSNSKPHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSIVGDIPYLVAHLRDDHRVDMHSGCTFNHRYVKSNPLEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYNYNLKVGGNGRKLTFEGSPRSIRDSHKKVRDNHDGLIIYRNMALFFSGGDRKGLKLRVTGRIWKEQKNPEAGVCIPNLFS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00048 309 ProSiteProfiles Zinc finger SIAH-type profile. 100 160 IPR013010 GO:0008270
Gabi3281g00048 309 CDD Sina 161 289 - -
Gabi3281g00048 309 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 288 IPR008974 GO:0005515
Gabi3281g00048 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 99 IPR013083 -
Gabi3281g00048 309 FunFam E3 ubiquitin-protein ligase SINAT5-like 156 288 - -
Gabi3281g00048 309 SUPERFAMILY TRAF domain-like 100 292 - -
Gabi3281g00048 309 CDD RING-HC_SIAHs 45 83 - -
Gabi3281g00048 309 ProSiteProfiles Zinc finger RING-type profile. 47 83 IPR001841 -
Gabi3281g00048 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 155 IPR013083 -
Gabi3281g00048 309 FunFam E3 ubiquitin-protein ligase SINAT3 97 155 - -
Gabi3281g00048 309 SUPERFAMILY RING/U-box 35 86 - -
Gabi3281g00048 309 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 29 294 - -
Gabi3281g00048 309 Pfam Seven in absentia protein family 89 288 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00048 Gabi-Chr3281 461137 464576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00048 24 295 C3H Transcription Factor Family AT2G41980 72.760 4.39e-157 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00048 K04506 - gmx:100792687 621.698