Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00045 ATGGAATCCGAGTCCGATCGGCGGTGCAAGCGTTCCGCCGGCCCAAAGTGGCGGTGCAGCGAAGCTGCGTCGCCGGGGAAATCGTACTGTGAGAAGCACCTCACGCAGCTTAAGAATCATAGGCAGAAACACAAGAACGAAGGTTCCAAGGCGGAGCAGAGAGCAAAGAAGAGGACAGTCGCGGATCTCAGTAGTGGATCGGAGGCTGAGTTGATTGGGAATTCGGCGAGAAATCAAAAGCGGACAAAGAAGAACGTGATTGATCAAGACAATGCAGGTGGTTGTGGCAAGTCACTAATGAATGTGTTTCAGGTCAAGAAGGACTCACGAGCCAAAATTGGAGTTCAAGATACCAAACAACTGGGCTTTTCCAGCAAAACCAAGGAGAGTGGAAGTTTAATGTGTCATCAGTGCCAACGGAATGATAAGACTGGCGTTGTCTTTTGCTCAAGTTGCAATGCAAAACGCTATTGTTATGAATGCCTTGAGAAGTGGTACCCAGGAAAAACCTGGGAGGAAGTTGAGAATGTATGTCCATTTTGTTGGGGCAATTGCAACTGCAAAGCTTGTTTGCGGGAGGTTCCAGTGCTTAGGCAACCAGAAGTAAATCCCAGTGTCAAATTACAACGACTGCTGTACTTACTATGTAAAGCTCTGCCAGTTCTGAGGCACATTCACAGGGAGCAGAGCTTTGAATTAGAGATTGAAGCCAAAATAAGGGGTAATCAACTACAAGAAATTGACGTAACAAGAACAAAGCTAGATGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCTATAATTGGATTTTACCGTAGCTGCCCCAACCCCACTTGCTCTTATGATCTCTGTCTCATGTGCTGTCAAGAGCTCAGAGAGGGTTGCCAACCTGGAGGCGTAGAAGCTGAAACATCTCAAGAACAATTTACAGAGAGAGTTCGTATTCATGATTTAACAAGAAATAAGAGTAAAACACATCGTAAGAGATATGGGTGGGAGAGCCAACTTGCACCTACTAGTTTTGATTCTCAAACTGATGACTTATCTCCCTTCCCTGAATGGAAAGCTAATAGTGATGGCAATATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGTGGTACTGGAATACTAGAACTGAGACGCACTTTCAAAGCTAATTGGGTAGCAAAATTGCTAAATAATGCTGAGGATCTCACTAGAGACTGCGCGCCACTGGATGAGGATATTACTGAAAGATGTTCTTTATGCCGGCCAAATTTGGTTGAAGGAAAAATCAATCCTGAAGTCCGGAGGGCAGCATACCGGGATGATAGTAATGATAATTTCTTATATTGTCCAAATGCCCTTGACATATCTGATGATGAGATTGAGCATTTCCAGAGGCACTGGATAAGGGGAGAACCCATTGTTGTGAGAAATATTCTGGATAACACATCTGGTCTTAGTTGGGAACCGATGGTTATGTGGAGGGCTCTTAGAGAAACAGGTTCCAAAGTGAAGTTCAAAGAGGAAACACGAAGTGTGAAGGCCATTGATTGCTTCGATTGGTGTGGGGTTGAGATTAATATTCACCAATTTTTTAAAGGCTACCTAGAGGGTCGAATGCATAAAAATAATTGGCCAGAAATGTTGAAATTAAAAGATTGGCCTTCATCGACCTCTTTCGAAGAGCGATTACCCAGGCATGGAATTGAATTTCTCGCTGCACTCCCCTATAGGGACTACACTGACCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGATAGCTTGCCGAAGCCAGATTTGGGACCCAAAACCTATATTGCTTATGGATTTTCTGAAGAGCTTGGTAGAGGAGATTCTGTCACAAAACTGCACTGTGATGTGTCTGATGCGGTCAATGTGCTGACACACACAAACAAGGTGAATATAGCTCCCTGGCAGAGAGAAAGCATAAAAAAATTGCAGAAGAAATATGCTGAAGAAGACTCTCGTGAACTTTATGGTGAAACATTAGTTGATGTTGATGGAAGATCTAAATCTACATCATTGAATCATGATCAAAAGGCAGAGAATAGAGTTAACAGGATTTCACCTAGTAGCCAAATGGATGAGTGCATTTCATCTATAGCTGAAGACATGAGTGGGAAGTTAGAAACACAGAACACTGAACAACGTGATGAGAATAGAAATTGCTCTGGCACCTGTAGAAATGTCGCTGACAGGAGCTCCTCTGCAGAAGATAGTGTAGGTATAACATCTACTGGAGTTTCAGATCAGTCCAGGACTTTCGAACTAGAACATGTTCCAAGCAGCTTAGCTTCAACTAATACGAGCAATAAGAAAGACAAAATGAGGAGTGATTTTCTAGATGTTAACATGTCTGGCGATCAAAAGTTAAGAGAGCCAAAACAAGGCCTCAGGAAAGATTCTTTGGAAACTGAAAATGGACCTGAGGTTGTCCATGGTGGTGCTGTTTGGGACATCTTTCGTCGTCAAGATGTCCCGAAGCTAATTGAGTACTTAAGAAACCACAAGAAGGAATTCCGTCATATCAACAACCATCCTATAGATTCTGTTATACATCCCATTCATGATCAGACTCTATTCTTAAATGAGAGGCATAAGAAACAGCTGAAAAGGGAGTTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGGTGTCCTCATCAAGTGAGAAATAGACAATCTTGTATAAAGGTTGCGCTTGATTTTGTTTCTCCGGAAAATGTTGGAGAATGCTTACAACTAACTGAAGAGTTTCGTTTGCTCCCGAAAAACCACAGAGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACACTTTATGCTGTAAGTCATGCTGTTAGAAAAGTCAAAGAACAGATGATGGCCAATGACTAA 2925 0.4267 MESESDRRCKRSAGPKWRCSEAASPGKSYCEKHLTQLKNHRQKHKNEGSKAEQRAKKRTVADLSSGSEAELIGNSARNQKRTKKNVIDQDNAGGCGKSLMNVFQVKKDSRAKIGVQDTKQLGFSSKTKESGSLMCHQCQRNDKTGVVFCSSCNAKRYCYECLEKWYPGKTWEEVENVCPFCWGNCNCKACLREVPVLRQPEVNPSVKLQRLLYLLCKALPVLRHIHREQSFELEIEAKIRGNQLQEIDVTRTKLDESERLYCDNCSTSIIGFYRSCPNPTCSYDLCLMCCQELREGCQPGGVEAETSQEQFTERVRIHDLTRNKSKTHRKRYGWESQLAPTSFDSQTDDLSPFPEWKANSDGNIPCPPKQRGGCGTGILELRRTFKANWVAKLLNNAEDLTRDCAPLDEDITERCSLCRPNLVEGKINPEVRRAAYRDDSNDNFLYCPNALDISDDEIEHFQRHWIRGEPIVVRNILDNTSGLSWEPMVMWRALRETGSKVKFKEETRSVKAIDCFDWCGVEINIHQFFKGYLEGRMHKNNWPEMLKLKDWPSSTSFEERLPRHGIEFLAALPYRDYTDPKSGLLNFASKLPDSLPKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRESIKKLQKKYAEEDSRELYGETLVDVDGRSKSTSLNHDQKAENRVNRISPSSQMDECISSIAEDMSGKLETQNTEQRDENRNCSGTCRNVADRSSSAEDSVGITSTGVSDQSRTFELEHVPSSLASTNTSNKKDKMRSDFLDVNMSGDQKLREPKQGLRKDSLETENGPEVVHGGAVWDIFRRQDVPKLIEYLRNHKKEFRHINNHPIDSVIHPIHDQTLFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCIKVALDFVSPENVGECLQLTEEFRLLPKNHRAKEDKLEVKKMTLYAVSHAVRKVKEQMMAND 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00045 974 SUPERFAMILY Clavaminate synthase-like 458 957 - -
Gabi3281g00045 974 MobiDBLite consensus disorder prediction 1 15 - -
Gabi3281g00045 974 MobiDBLite consensus disorder prediction 725 778 - -
Gabi3281g00045 974 ProSiteProfiles JmjC domain profile. 568 936 IPR003347 -
Gabi3281g00045 974 MobiDBLite consensus disorder prediction 779 814 - -
Gabi3281g00045 974 SMART cupin_9 561 936 IPR003347 -
Gabi3281g00045 974 FunFam Transcription factor jumonji (JmjC) domain-containing protein 755 945 - -
Gabi3281g00045 974 ProSiteProfiles Zinc finger RING-type profile. 135 181 IPR001841 -
Gabi3281g00045 974 Pfam WRC 7 45 IPR014977 -
Gabi3281g00045 974 ProSiteProfiles WRC domain profile. 3 48 IPR014977 -
Gabi3281g00045 974 MobiDBLite consensus disorder prediction 713 814 - -
Gabi3281g00045 974 MobiDBLite consensus disorder prediction 33 63 - -
Gabi3281g00045 974 MobiDBLite consensus disorder prediction 675 701 - -
Gabi3281g00045 974 Pfam JmjC domain, hydroxylase 823 919 IPR003347 -
Gabi3281g00045 974 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 20 971 IPR045109 GO:0032454|GO:0033169
Gabi3281g00045 974 MobiDBLite consensus disorder prediction 1 87 - -
Gabi3281g00045 974 Gene3D Cupin 764 945 - -
Gabi3281g00045 974 Gene3D Cupin 445 724 - -
Gabi3281g00045 974 Coils Coil 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00045 Gabi-Chr3281 426835 438584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00045 8 85 GRF Transcription Factor Family AT4G37740 29.487 6.28e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi3281g00045 JmjC 3.8e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00045 K15601 - vvi:100258626 1142.49