Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00044 ATGGAAGCTGAAACTCAACGGAAAATCGAGGAGATGGTGATGGATATACTGAAGAAATCCAATATGGAGGAAACCACTGAGTTCAGCATCCGAGTCGCTGCCTCAGAGCGCCTCGGCATCGATCTCTCGTCCCCGGAGTGTAAGCAACTTGTCAGAACCGTCGTAGAGTCTTATCTTGTCACCGTCGCTGCCGAAGGGAAACCACCGGAAGAATCCAGAGAATTGATGAAACCGACTAAGAAAAAGGAGGACACGGAAATGCCTCAAGAATCCAGAGAAGTGGTCAAACACAATAAGGAGGACTCGTACCGTGTTATTTGCCAGCTGTCAAACAGGAGGAATGTGGTGGTACAAAATTTCAAAGGGACAACGTTGGTGTCAATTAGGGAGTTCTATAATAAAGATGGGAAACAGCTTCCCGGCTCTAAAGGGATAAGTTTATCTATTGAACAATGGTCAACCTTCAAGAAGAGTGTTCCTTCCATAGAGGAAGCCATCACAAAGATGGAAGGAAGGTTAAGATCAGAGCTTAATGGTAAGCAAAATGGAGATGTGACGAATTCAGTTGCTGATGTTGCTCCTGTTGAGCTTGTCCCTATTGAGATCATCCGTTTTGATGGGAAAGATTACCAATTATGGGCTCAACAGATGGAATTACTCTTTAAACAGCTAAAGATTGAATATGTGCTTACTGAATTATGCCCAAATGCTACATTAGGGGAAGATGCAACTGCTGAAGAAATTGCTGGAGCCAAGGCTACAGAAAAGAGATGGGTGAATGATAATTTAATGTGTCGTCGCAATATCTTGAGCCATTTATCTGATCATCTTTTCAATCAGTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAACTGGTTTATCTGTATGAGGAATTTGGAACCAAGAGATCTCAAGTGAAAAAGTATATTGAATTTCAGATGGTTGATGAGAGAGCAATTGTTGAGCAAATCCTGGAATTCAATAGCATTGCAGACTCTGTTGTTGCTAATGGAATGTTTATTGACGAGAACTTTCATGTTAATGTCATCATTTCAAAGCTTCCACTGTCCTGGAAGGACTTTAGCATCAAGTTAATGCGTGAGGAGTATCTACCTTTATGGAAGTTAATGGAAGGTATAAGGATAGAGGAAGAGGCTCGGAATGGTATCAAACGGGTGGGTGAACCTTCTAATAGTATAGTATTTCACCAAGTCAATAAAGGTGGACCGAGGTGGGCTGACAATAAGCCACCGGGGATGAATAGGCATAAGTCAGAAATGAATGCCAAGAGCGTAGCCTGTTATATTTGTGGCAAGAAGGGGCATCTTTCTAAAAACTGCTGGAGAAGATATGACAAGCAAGCTAATGAAAGGAAAGCAGAAGAGGATATGCGTATTCCAACAGAAGTTAATACAGCTGGGGTTATGGAGTAA 1449 0.4175 MEAETQRKIEEMVMDILKKSNMEETTEFSIRVAASERLGIDLSSPECKQLVRTVVESYLVTVAAEGKPPEESRELMKPTKKKEDTEMPQESREVVKHNKEDSYRVICQLSNRRNVVVQNFKGTTLVSIREFYNKDGKQLPGSKGISLSIEQWSTFKKSVPSIEEAITKMEGRLRSELNGKQNGDVTNSVADVAPVELVPIEIIRFDGKDYQLWAQQMELLFKQLKIEYVLTELCPNATLGEDATAEEIAGAKATEKRWVNDNLMCRRNILSHLSDHLFNQYANRKMSAKELWEELKLVYLYEEFGTKRSQVKKYIEFQMVDERAIVEQILEFNSIADSVVANGMFIDENFHVNVIISKLPLSWKDFSIKLMREEYLPLWKLMEGIRIEEEARNGIKRVGEPSNSIVFHQVNKGGPRWADNKPPGMNRHKSEMNAKSVACYICGKKGHLSKNCWRRYDKQANERKAEEDMRIPTEVNTAGVME 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00044 482 FunFam RNA polymerase II transcriptional coactivator KELP 98 170 - -
Gabi3281g00044 482 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 171 IPR045125 GO:0003713|GO:0060261
Gabi3281g00044 482 Pfam gag-polypeptide of LTR copia-type 259 392 - -
Gabi3281g00044 482 SUPERFAMILY Retrovirus zinc finger-like domains 421 459 IPR036875 GO:0003676|GO:0008270
Gabi3281g00044 482 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Gabi3281g00044 482 SMART c2hcfinal6 438 454 IPR001878 GO:0003676|GO:0008270
Gabi3281g00044 482 MobiDBLite consensus disorder prediction 66 95 - -
Gabi3281g00044 482 Pfam DEK C terminal domain 5 59 IPR014876 -
Gabi3281g00044 482 Gene3D Transcriptional Coactivator Pc4; Chain A 96 173 IPR009044 GO:0003677|GO:0006355
Gabi3281g00044 482 ProSiteProfiles Zinc finger CCHC-type profile. 439 452 IPR001878 GO:0003676|GO:0008270
Gabi3281g00044 482 Gene3D - 432 478 - -
Gabi3281g00044 482 Pfam Transcriptional Coactivator p15 (PC4) 107 157 IPR003173 GO:0003677|GO:0006355
Gabi3281g00044 482 MobiDBLite consensus disorder prediction 67 95 - -
Gabi3281g00044 482 SUPERFAMILY ssDNA-binding transcriptional regulator domain 106 168 IPR009044 GO:0003677|GO:0006355
Gabi3281g00044 482 Pfam Zinc knuckle 438 452 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00044 Gabi-Chr3281 420468 423676 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Gabi3281g00044 Retrotran_gag_2 4.4e-12 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00044 - - gmx:100800963 619.387