Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00040 ATGAAGGTGGAGGTTGGCTTAGGGCGCGTGTTGTGGGATGATGATGAGAAGGCCATGGTTTCAGCTGTTCTGGGCGCTCGAGCTTTCGATTTCTTGGTGACAAACTCTGTGTCGAATGAGAGTATGTTAATGGCTGTTGGGAGTGACGAAGGTCTGCAGATGAAGCTGTCGGATCTCGTGGACCGTCCGAACGTGTCCAATTTCAGCTGGAACTATGCTATTTTCTGGCAACTTTCGCAGTCAAAATCTGGGGATTGGGTTCTGGGTTGGGGAGATGGTTGTTGCAGGGAACCCAACGAGGAAGAAGAGGGTGGAGTTAGAGGAATCCTGAGCCTTCGTATCGAGGAAGAGACGCAACAGAGGATGAGGAAGAGGGTTCTGCAGAAGCTGCACACAACTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGGCTTGACCGTGTGACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCTCGCGGGCATGGTGGCCCAGGTAAGTGTTTTGCATCAGGGAAGCATTTGTGGCTGAAATCTGTATCTGATTACTGCGTGAGATCTTTCTTGGCTAAATCAGCTGGAATTCAGACTGTTGTTTTAGTCCCTACTGATTTGGGAGTTGTGGAGTTGGGTTCTGTGAGAATGCTACCTGAGAGCTTTGAATTGTTGCAGGCCATCAAATCTGTGTTCTCCACCCAATCATCATCATACCCTGTGGTGAAGCCACTTTCACCTTTACCTGCTGTGGCTGCGGTGAATGAGAAGAAAAGGGACGAGAATGCCCTTTTTCCTGGTTTGGCAGATGGAGTTCCTAAAGGTTATCTGAACACTGCTCGTACTCATTTCAGGGAGAAACTTGCTGTTAGGAAAATGGAAGATAGGCCATGGGGAGGCCACGGCCACCCCAATGGAAATAATACCATTAACTTTCCTAATGCTCGAAATGGTCTTCATGGTTCAAGTTGGGGACAGCCTAACCCTACTGAAATTTTTGCTCCTAGGTCCTCCACAAGCAATGTTCAGGAGCTAGCTAATGGTGCGAGACAGGATTTCAGGCTGAGCAACAACTATCAACCGCAAAGGCAGGTGCAAATTGACTTTTCTGGAGCCACTTCAAGGCCTTCTCTGAGACCAATCATTGCTGAATCAGAACTTTCTGATGTTGAGGCCTCTTGCAAGGAGGAGCAACCGAGTGCTACCGATGAAAGGAGGCCCAGGAAGCGTGGCAGGAAGCCTGCTAATGGAAGGGACGAACCCCTTAATCATGTGGAAGCAGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGTTTCTATGCCTTAAGATCTGTTGTGCCAAACATCTCCAAGATGGATAAGGCATCGTTACTTGGTGATGCCATTGCTTATATCAATGAGCTACAGGCAAAACTCAAGATCATGGAGTCTGAGAGAGAGAGATTTGGAAGCACTTCAAGGGATGGATCAGTCTTGGAGGCAAACCCAAGATCAGAAGATAATCAGAATAGAGCTCCTGATGTGGATATTCAAGCTGCTCAAGATGAGGTCATTGTAAGGGTGACCTGCCCTCTTGATACTCACCCAGTTTCAAGAGTAATACAAACATTCAAAGAGGCACAAATCAGTGTTGTAGAGTCAAAACTCGCTGCCGCAAATGATACAGTGTTTCATACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTTACAAAGGACAAGTTGATTGCTGCATTTTCCCGAGAATCCAACTCCTTACAGCCATTGTCATCTGTTGGGTAG 1794 0.471 MKVEVGLGRVLWDDDEKAMVSAVLGARAFDFLVTNSVSNESMLMAVGSDEGLQMKLSDLVDRPNVSNFSWNYAIFWQLSQSKSGDWVLGWGDGCCREPNEEEEGGVRGILSLRIEEETQQRMRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHLWLKSVSDYCVRSFLAKSAGIQTVVLVPTDLGVVELGSVRMLPESFELLQAIKSVFSTQSSSYPVVKPLSPLPAVAAVNEKKRDENALFPGLADGVPKGYLNTARTHFREKLAVRKMEDRPWGGHGHPNGNNTINFPNARNGLHGSSWGQPNPTEIFAPRSSTSNVQELANGARQDFRLSNNYQPQRQVQIDFSGATSRPSLRPIIAESELSDVEASCKEEQPSATDERRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKIMESERERFGSTSRDGSVLEANPRSEDNQNRAPDVDIQAAQDEVIVRVTCPLDTHPVSRVIQTFKEAQISVVESKLAAANDTVFHTFVIKSQGSEQLTKDKLIAAFSRESNSLQPLSSVG 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00040 597 Pfam Helix-loop-helix DNA-binding domain 427 473 IPR011598 GO:0046983
Gabi3281g00040 597 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 236 IPR025610 -
Gabi3281g00040 597 MobiDBLite consensus disorder prediction 492 508 - -
Gabi3281g00040 597 FunFam Transcription factor bHLH13 416 490 - -
Gabi3281g00040 597 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 426 486 IPR036638 GO:0046983
Gabi3281g00040 597 MobiDBLite consensus disorder prediction 300 348 - -
Gabi3281g00040 597 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 423 472 IPR011598 GO:0046983
Gabi3281g00040 597 Coils Coil 469 489 - -
Gabi3281g00040 597 CDD bHLH_AtAIB_like 420 485 - -
Gabi3281g00040 597 Gene3D - 417 488 IPR036638 GO:0046983
Gabi3281g00040 597 MobiDBLite consensus disorder prediction 393 434 - -
Gabi3281g00040 597 MobiDBLite consensus disorder prediction 308 348 - -
Gabi3281g00040 597 MobiDBLite consensus disorder prediction 483 508 - -
Gabi3281g00040 597 PANTHER MYC 29 582 IPR045084 GO:0003700|GO:0006355
Gabi3281g00040 597 SMART finulus 429 478 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00040 Gabi-Chr3281 401408 404074 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00040 5 597 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 53.280 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3281g00040 bHLH-MYC_N 3.8e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00040 - - adu:107491937 863.988