Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00039 ATGGACCATCAACCACCACCGTGCCCCGAAGATGACGTAACCATCACCGCCACAACTACCACCAAGAAAACCGACAGCCAGCAAGGCGGCACACGCCACCCAGTGTACCGTGGCGTCAGGAAGCGGCGGTGGGGCAAATGGGTATCCGAAATTCGGGAGCCACGCAAGAAATCGCGCATATGGTTGGGGTCGTTCCCGGTGCCGGAGATGGCAGCGAAAGCATACGACGTCGCAGCGTACTGCCTGAAAGGCCGAAAAGCCCAGCTCAATTTTCCCGACGAGGTGGAGCACCTGCCTCTTCCGTCCACATGCACCGCCAGAGACATTCAGGCGGCGGCGGCCAAGGCGGCGCATATGATTAAAACTTTGCCTGATGAGAAAAGTAGCATTGTATCCGACGGGGATAGCGGCGGCGATGATTTTTGGGGTGAGATTGAGTTGCCGGAGCTGATGGACAGCGAGTACTGTTGTTGGAGTTCTCCAAGCGGGTCCTCGTGGACTTCCTCCGGCGACCTCACGGCGTGGCCGGAGGTTCAGCTTTGA 543 0.5856 MDHQPPPCPEDDVTITATTTTKKTDSQQGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAAKAYDVAAYCLKGRKAQLNFPDEVEHLPLPSTCTARDIQAAAAKAAHMIKTLPDEKSSIVSDGDSGGDDFWGEIELPELMDSEYCCWSSPSGSSWTSSGDLTAWPEVQL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00039 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 19 151 - -
Gabi3281g00039 180 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Gabi3281g00039 180 PRINTS Ethylene responsive element binding protein signature 74 94 IPR001471 GO:0003700|GO:0006355
Gabi3281g00039 180 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Gabi3281g00039 180 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Gabi3281g00039 180 Pfam AP2 domain 34 84 IPR001471 GO:0003700|GO:0006355
Gabi3281g00039 180 MobiDBLite consensus disorder prediction 1 34 - -
Gabi3281g00039 180 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Gabi3281g00039 180 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Gabi3281g00039 180 MobiDBLite consensus disorder prediction 13 31 - -
Gabi3281g00039 180 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Gabi3281g00039 180 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00039 Gabi-Chr3281 374879 375555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00039 1 153 AP2-EREBP Transcription Factor Family AT1G01250 63.354 1.32e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi3281g00039 AP2 1.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00039 K09286 - gmx:100819971 251.136