Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00034 ATGGGTTTCCATGCTGAGGCAGAGTCGAAGACCCATCAACCTTGCGCAGCTTGCAGGATGCTACGCCGTAGATGTGACAGTAAGTGCCTACTTGCTCCATATTTCCCAACTCACGAGGTTGAAAAATTTGTTGGAGTGCATAGGGTGTTCGGTGCTAGCAACGTCATCAAAATGATTCAGATAGTGGAGGAGACAAAGAGAGAGGATGCTGTTAAAGCCATGGTCTATGAGGCCACGGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGTGCTATTTTCCAGCTGCAAAAGATGATTCAGGAACTGAAGGCGCAGCTGGAATCGATAGAAACTCGGGTCTCAGAGCAGCGAGAACAAAAAGAGCAGCTGTTGAGCATTCATAATGAACACGCTCACGGCCATCTTGACACTGTCTTTCCAATCAATGACAACCCTATCTTTGATGGTTACGGTACTTTAGTAGACTTTGATCATCCCATGGCCGGTGAGCCACTTGAATTTCCTGTAGAAGGTGACTGGGTACTTAGCAATATTAATAATATCCACCTGCTAGAGAGAACTTGA 567 0.4656 MGFHAEAESKTHQPCAACRMLRRRCDSKCLLAPYFPTHEVEKFVGVHRVFGASNVIKMIQIVEETKREDAVKAMVYEATARLRDPVYGSAGAIFQLQKMIQELKAQLESIETRVSEQREQKEQLLSIHNEHAHGHLDTVFPINDNPIFDGYGTLVDFDHPMAGEPLEFPVEGDWVLSNINNIHLLERT 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00034 188 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Gabi3281g00034 188 Coils Coil 93 127 - -
Gabi3281g00034 188 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
Gabi3281g00034 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00034 Gabi-Chr3281 347733 349008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00034 14 127 AS2 family AT2G28500 55.263 1.58e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi3281g00034 LOB 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00034 - - ccaj:109796546 266.544