Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00033 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGTTGCACAGAGGTCCATGGACTCCTCGAGAAGATGCATTGCTCACCAAATATATTCAAGCACATGGAGAAGGCCAGTGGAGATCACTACCTAAAAGAGCTGGGCTTCTTAGATGTGGAAAAAGTTGCAGACTGAGATGGATGAATTATCTGAGACCAGATATAAAGAGAGGTAACATAACTCCCGAAGAAGATGACCTTATAATTAGAATGCATTCACTTCTGGGAAATAGATGGTCCCTCATCGCTGGAAGAATACCGGGACGAACTGATAATGAGATAAAGAACTATTGGAATACCCATCTCAGTAAGAAACTGAAAAATCAAGGAACAGATCCAAACACACACAAGAAGTTAACAGATCCAGCTCAAGAACCAGCAGCGAAGAAAAAGAAGAAGAATAAGCACAAGAGCAACAAGAACAAAGGAGGAGCAGAAGTAAAGGCAGAGAAGGCCATAGTTTATCTACCAAAGCCCATAAGGGTAACGACTTTATCATCTATAAAATTACCTAGAACGGATAGTATCTTGACCTTGGATTCCAACTCAGCTAGTGCAACAACAAGCCAAGAGAAAGAGCAAAGCCAAGAAGCCAAAGAGTTAAACGTGGTTTGGGGGGTAGGTAACGAGGGAGAAAATGACGGGTTTGGATTCTTTGGTGGTGAAGACCATGTCATAGTCAACATCTCTGACATTGAATGCCAATCTGATTTTCTCACGGATCATGGAACACTCGAGAAGCTCTATGAAGAGTATTTGCAGCTCTTGAAGGTTGAAGAGAACCCGGACTCGTTAGATTCTTTTGCTGAATCTTTACTTGTGTAA 855 0.4187 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLKNQGTDPNTHKKLTDPAQEPAAKKKKKNKHKSNKNKGGAEVKAEKAIVYLPKPIRVTTLSSIKLPRTDSILTLDSNSASATTSQEKEQSQEAKELNVVWGVGNEGENDGFGFFGGEDHVIVNISDIECQSDFLTDHGTLEKLYEEYLQLLKVEENPDSLDSFAESLLV 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00033 284 FunFam transcription repressor MYB5-like 71 152 - -
Gabi3281g00033 284 CDD SANT 16 61 IPR001005 -
Gabi3281g00033 284 Gene3D - 71 158 - -
Gabi3281g00033 284 MobiDBLite consensus disorder prediction 120 138 - -
Gabi3281g00033 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi3281g00033 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi3281g00033 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gabi3281g00033 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi3281g00033 284 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi3281g00033 284 SMART sant 13 63 IPR001005 -
Gabi3281g00033 284 SMART sant 66 114 IPR001005 -
Gabi3281g00033 284 CDD SANT 71 112 IPR001005 -
Gabi3281g00033 284 MobiDBLite consensus disorder prediction 115 156 - -
Gabi3281g00033 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi3281g00033 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi3281g00033 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 208 - -
Gabi3281g00033 284 FunFam Myb transcription factor 11 67 - -
Gabi3281g00033 284 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00033 Gabi-Chr3281 329074 330537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00033 4 129 MYB Transcription Factor Family AT3G13540 75.397 9.81e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi3281g00033 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00033 K09422 - gmx:778044 405.601