Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00027 ATGGATTCTGGTGCTGTATTGGCATTGCCTGTGGACAATGGATTCATAACAAGGGAACCTTATGATTTCGAAGAGGACTTTGTAGAGAAAGATCCTACTGGCCGGTATCTTCGGTACAATGAGATCTTGGGCAAGGGTGCTTTCAAGACTGTTTATAGGGGCTTTGATGAAACTGATGGAATAGAAGTTGCGTGGAACCAAGTCCGGATTGATGAACTCTTGCAGTCAGTTGATGATCTTGCAAAATTGTATTCTGAAGTTCATCTATTGAAGTCTCTGAAACACGAAAATATCATAAAGTTCTTTAATTCCTGGATTGATGATAAGAAGAAAACTATTAACATTATTACTGAGCTATTCACATCTGGAAATTTAAGGCAATACCGTAAGAAGCATAGATATGTTGACATGAAAGCCATTAAAGGTTGGGCTAGACAGATTCTTCAAGGCTTAGTTTATCTTCACAGTCATAAGCCTCCTATTATTCACAGAGACTTGAAATGCGACAACATCTTTGTAAATGGAAACCATGGAAAAGTTAAAATAGGAGACCTTGGTTTGGCAATTGTCATGCAGCAACCAACTGCTCGAAGTGTTATTGGGACGCCTGAGTTTATGGCTCCAGAACTATATGAAGAGGAATACAATGAACTCGTTGATGTCTATTCTTTTGGGATGTGCATGTTGGAGATGGTTACTTTTGAGTACCCGTACAGTGAATGTACAAATCCAGCCCAAATCTATAAGAAAGTTACCTCTGGCATTGAACCTGCATCCCTTAAAAGGGTGAGTGATCCCCAAATTAAAGAGTTTATCAAGAAATGTCTCGTTCCAGCATCTGAGAGATTGTCTGCAGAGGAGCTTCTTAAAGACCCATTTCTGCAAGTTGAGAGTCCTAAGGATCCAATCCTTGATCCCTCACAGTTACCTAGTAAATCTCTAAAAGCTATAGATCTGTCAAAGTCTGGTCATATATCTATGGACCTAGATGCTGACTACAAACAGATCTCTATCAGTACTTGTGCTGAAAGAAGCCAGGGAAGTCAACATTGTCCATTTCTTGAAGTTCAGAGGACATATAAGAACAATGAGTTTAGGTTGAAGGGGATAAAAAATGATGATAACTCAATATCATTGATCCTGCGTATTGCTGATTTATGCGGTCGTGTAAGGAATATACATTTTCTCTTTTACCTTGAGACGGATACTGCTGTCTCTGTTGCCGCAGAGATGGTTGAAAATTTGGAGTTGACAGATCATGATGTAGCCTTCATAGCTGAGCTTATTGATTACTTGATAATGAAACTTCTACCTGGGTGGAAGCCCTCATCTGATTATTCCTCAAGTGGAGGATTAAGTCTGTGTGGTGGCTCTCCAACACTTGGAGATGGCCAAACCATAATGCCAAGTCCATGGGGTTCTGTCCTAACTAGTGTTCCCTCTGAATTGGCTTATGATCAAGATAACCTCTCTGGGTTTAATATTTCTCAAAGAGAAGGTTTTGCAAGAGCTGAGGTGAGCTGCATGTTTAACGTTGCTGATAATGCTACCTTTGAGGGTGAGTATAATTCTTCTCCTAGTTTGGCTAGCTTGGAAGATCAATATTCACAAGAATCTGCAGCTTCTGAGATAGTTACTGAAGATGCTTGCATGAAAAATGACAACAGCCTCGATTCCGATGCGGATGTGAGCTATAAAGGATTAAGTTGGTCCACCTCGGAACTGGAGCTTGGGGATACATATTTTGAAGACTTCAAATTGCAGATCACACACTGCAATGGTGAAGGCATTGTGATAAATGAATTCTCAAAAAACTCACACTCTAATATCATGAGCTTGATAAGCAGCTGTTCTTCTGTGTCTTTAGCAGACAAAGACATTGACCTTGAACTAAAGATTGAACTTGATGCAATTGAGTCACAGTATCAACATTGGTTTCAAGAACTTTCTAAAATGAAGTTGGAGGCATTGGAAACTACCAGAAAGAGATGGACAGCCAAGAAGAAACTTGCTTTTCATTGA 2022 0.3976 MDSGAVLALPVDNGFITREPYDFEEDFVEKDPTGRYLRYNEILGKGAFKTVYRGFDETDGIEVAWNQVRIDELLQSVDDLAKLYSEVHLLKSLKHENIIKFFNSWIDDKKKTINIITELFTSGNLRQYRKKHRYVDMKAIKGWARQILQGLVYLHSHKPPIIHRDLKCDNIFVNGNHGKVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVTFEYPYSECTNPAQIYKKVTSGIEPASLKRVSDPQIKEFIKKCLVPASERLSAEELLKDPFLQVESPKDPILDPSQLPSKSLKAIDLSKSGHISMDLDADYKQISISTCAERSQGSQHCPFLEVQRTYKNNEFRLKGIKNDDNSISLILRIADLCGRVRNIHFLFYLETDTAVSVAAEMVENLELTDHDVAFIAELIDYLIMKLLPGWKPSSDYSSSGGLSLCGGSPTLGDGQTIMPSPWGSVLTSVPSELAYDQDNLSGFNISQREGFARAEVSCMFNVADNATFEGEYNSSPSLASLEDQYSQESAASEIVTEDACMKNDNSLDSDADVSYKGLSWSTSELELGDTYFEDFKLQITHCNGEGIVINEFSKNSHSNIMSLISSCSSVSLADKDIDLELKIELDAIESQYQHWFQELSKMKLEALETTRKRWTAKKKLAFH 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00027 673 Gene3D - 375 442 - -
Gabi3281g00027 673 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 22 663 - -
Gabi3281g00027 673 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 433 IPR024678 GO:0004674|GO:0005524
Gabi3281g00027 673 SUPERFAMILY Protein kinase-like (PK-like) 38 331 IPR011009 -
Gabi3281g00027 673 CDD STKc_WNK 35 294 - -
Gabi3281g00027 673 Gene3D Transferase(Phosphotransferase) domain 1 120 299 - -
Gabi3281g00027 673 SMART serkin_6 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3281g00027 673 ProSiteProfiles Protein kinase domain profile. 37 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3281g00027 673 Pfam Protein kinase domain 40 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3281g00027 673 FunFam Probable serine/threonine-protein kinase WNK1 22 118 - -
Gabi3281g00027 673 Gene3D Phosphorylase Kinase; domain 1 21 118 - -
Gabi3281g00027 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Gabi3281g00027 673 FunFam probable serine/threonine-protein kinase WNK9 120 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00027 Gabi-Chr3281 288033 292021 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00027 603 673 MAP Kinase Kinase Kinase AT5G41990 36.620 9.85e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi3281g00027 Pkinase 2.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00027 K08867 - gmx:100272197 921.383