Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00026 ATGAGGCCAGTTTTCGTTGGTAACTATGAGTACGATACCCGTCAATCAGAGCTTGAACGCTTGTTCGCCAAGTATGGAAGGATTGAGCGCGTTGACATGAAATCTGGTTTTGCTTTTGTCTACTACAAGGACGAGCGAGATGCTGAAGACGCAGTTCGTGCACTTGACGATTTTCCATTTGGATATGAAAAGCGAAGGCTGTCTGTGGAGTGGGCTAGGGGTGAACGTGGCCGCAATCGTGATGGTTCTAAGGCAAACCAGAAGCCCACAAAAACTCTATTTGTGATTAATTTTGACCCAATTCGAACCAGAGTCCGTGACATCGAAAGACACTTTGAACCTTATGGGAAGCTTCTTCATGTTCGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACCAAAGCTCTTGAGTGTACACATATGAGTAAGATATTGGACCGAGTGGTGTCTGTTGAGTATGCTCTGAGGGATGATGGTGAGAAGAGTGACAAATATGATGACAGTCCTAGAAGAGGGGGTTATGGGAGATCACCCAGTCCAGTTCATCGTAGGCGATCAAGTCCTGACTATGGTCGTCCACACAGTCCTTTGCATGATAGGTTCAATGGAGCAGCCTATGACCGGCGCAAGAGCCCTTATTATGGTAGGCATGTGAGTCCTGAATATGGTAGATATCGCAGTCGTTCACCAATAAGAAGGTCAAGAACTTAA 729 0.4568 MRPVFVGNYEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYKDERDAEDAVRALDDFPFGYEKRRLSVEWARGERGRNRDGSKANQKPTKTLFVINFDPIRTRVRDIERHFEPYGKLLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGEKSDKYDDSPRRGGYGRSPSPVHRRRSSPDYGRPHSPLHDRFNGAAYDRRKSPYYGRHVSPEYGRYRSRSPIRRSRT 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00026 242 Gene3D - 1 83 IPR012677 -
Gabi3281g00026 242 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Gabi3281g00026 242 MobiDBLite consensus disorder prediction 165 242 - -
Gabi3281g00026 242 Gene3D - 84 174 IPR012677 -
Gabi3281g00026 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Gabi3281g00026 242 CDD RRM2_AtRSp31_like 92 161 - -
Gabi3281g00026 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 58 IPR000504 GO:0003723
Gabi3281g00026 242 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Gabi3281g00026 242 MobiDBLite consensus disorder prediction 188 234 - -
Gabi3281g00026 242 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
Gabi3281g00026 242 SMART rrm1_1 92 158 IPR000504 GO:0003723
Gabi3281g00026 242 SMART rrm1_1 3 70 IPR000504 GO:0003723
Gabi3281g00026 242 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Gabi3281g00026 242 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Gabi3281g00026 242 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00026 Gabi-Chr3281 283461 285927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00026 4 168 Eukaryotic Initiation Factors Gene Family AT1G49760 23.656 1.39e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00026 K12893 - gmx:100797709 394.815