Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00017 ATGTTAGATCATATGGAATATTCTCTTTCGTCAGAAACTTACAGCAGCACAACTCAACCAGCAGCCACAAAAAAGAAGGGGAGCAAAAACAAAAGGTTTAGCGACAAACAAATCAAATCATTGGAATCTATGTTTGAGACAGAGCCGAGCCTCGAACCTATAAAGAAGTTGCAGTTGGCAAGAGAGCTTGGGTTGCAGCCACGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTCGATGGAAGTCAAAGCAGCTTGAGCAAGACTACATCATACTTCGAGCCAATTATAACAATTTGGCTTCACAATTTGATGCTCTCAAGAAGGAGCATCAGGCATTGCTAACACAGTTGCAGAAGCTGAATGATCAAATACAAAATCCACCAGAGCAAACTCATAGTTGTAGACAAGATAAAGCATCGAACTGCAGCATGGACAACGAAACAGAAAATGGAGACACCATCAAAAGTGAACCGGAGGTAAAGCCATGCCCGTCAACAGAAAGATCAGAATACTTTGGTCTGGAAGATGAACCTTCCCTTCTGAACTTTGTTGAGCATTCTGATGGTTCTTTGACATCACCAGAAGATTGGGGTATGTTTGATTCATATGATCTCTTAGGCCAATCAACCAGTGATTATCAATGGTGGGATTTCTGGTCCTGA 666 0.4189 MLDHMEYSLSSETYSSTTQPAATKKKGSKNKRFSDKQIKSLESMFETEPSLEPIKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEQDYIILRANYNNLASQFDALKKEHQALLTQLQKLNDQIQNPPEQTHSCRQDKASNCSMDNETENGDTIKSEPEVKPCPSTERSEYFGLEDEPSLLNFVEHSDGSLTSPEDWGMFDSYDLLGQSTSDYQWWDFWS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00017 221 Pfam Homeodomain 31 82 IPR001356 GO:0003677
Gabi3281g00017 221 SUPERFAMILY Homeodomain-like 6 86 IPR009057 -
Gabi3281g00017 221 SMART HOX_1 27 88 IPR001356 GO:0003677
Gabi3281g00017 221 MobiDBLite consensus disorder prediction 151 168 - -
Gabi3281g00017 221 PRINTS Lambda-repressor HTH signature 64 80 IPR000047 GO:0003677
Gabi3281g00017 221 PRINTS Lambda-repressor HTH signature 55 64 IPR000047 GO:0003677
Gabi3281g00017 221 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Gabi3281g00017 221 Coils Coil 83 124 - -
Gabi3281g00017 221 Gene3D - 12 93 - -
Gabi3281g00017 221 Pfam Homeobox associated leucine zipper 84 125 IPR003106 GO:0006355|GO:0043565
Gabi3281g00017 221 FunFam Homeobox-leucine zipper protein ATHB-7 11 84 - -
Gabi3281g00017 221 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Gabi3281g00017 221 MobiDBLite consensus disorder prediction 127 150 - -
Gabi3281g00017 221 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3281g00017 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 23 160 IPR045224 GO:0003700
Gabi3281g00017 221 CDD homeodomain 29 85 IPR001356 GO:0003677
Gabi3281g00017 221 MobiDBLite consensus disorder prediction 127 168 - -
Gabi3281g00017 221 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00017 Gabi-Chr3281 174819 175604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00017 32 221 Homeobox Transcription Factor Family AT3G61890 55.340 8.86e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi3281g00017 Homeodomain 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00017 K09338 - qsa:O6P43_027419 283.878