Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3281g00012 ATGGAGGATTTGATAATATCTCCTTCTTCATCGTCCTCTTTGGTCTCTCTGCCCCATGAAAACACACCAACCCTCCAACAGAAGCTTCAATTCTTACTCCAGAGTCAACCAGATTGGTGGGTGTATGCCATTTTCTGGCAGACAACAAACGACGACAATGGCAACCTCTACTTATCATGGGGAGATGGCCATTTCCAAGGAACCAAAGACACCTCTCCTAGGCTTCCCCATCATTACCCCATTTTAGCAGAGCGAATGAAGTTCATGAAAGACATCCAATCTCTCATCAACGACAACATGTGCAATGACGGTGAATGGTTCTATGTCATGTCGTTGACTCGCACTTTCTCCGTTGGAGATGTTTCTTCACTTCCAGCCAAGGCCTTCACTTCGGGTTCTTTGATTTGGTTAAAAAGCGATCATCACGAGCTTCAATTTTCCAACTGCGAAAGAGCTAAAGAGGCTTACGTGCATGGGATCCAAACTCTAATCTACATCCCAACCAGCAATGGCGTTCTTGAAATGGGTTCCAACGATGTCATCACAGAAAACTGGGGACTACTCCAACATGCCAAATCTCTGTTTGGATCCGATCTCATTATAAGCATGCCACACAATAAGCAACTAAACCCAATTCAATTCTTCGACGACCAGAACATCTCATTCGCAGACATCGGCATTATCGCCGGCGTTCAAGAAGAAGACAATTCCAACGTCGACGATGTAAAGAAGAGAAAAGAAAGAGATCCCAATAAGAATAAGAAGGAGTCATCGGTGCTCAAGTTCGGGTCACGTCAACGTTCTTATGCAGATTCTGAACATTCTGACTCGGATTGTGCACTCATGACAGAGAAAAGAGCACCGAAAAAGAGGGGGAGAAAGCCAGGTCTTGGCCGTGAAACGCCGTTGAACCACGTGGAGGCAGAGCGGCAGCGGCGAGAGAAGCTGAACCACCGCTTCTACGCGTTGAGAGCGGTGGTGCCGAACGTTTCGAGAATGGACAAAGCTTCTCTGTTATCGGATGCTGTGGCTTACATCAACGAACTCAAAGCAAAGGTGGATGAAATGGAGGGACAGTTGCAGAAAGAGTCTAACAAGAAGGTGAAAGTGGAAATGGGTGACAATATGGACAACCATAGCACCACAACTTCCTCCGTTGACCAAACGGGGACGAATGGGTTTGCGCTTGAACTTGAGGTGAAGATCATTGGGCCAGATGCCATGGTAAGGGTTCAATCGGAGACTGCGAACCACCCTGGGGCCAGGTTAATGGTTGCATTGCGTGACTTAGAGTTTCAAGTGCACCATGCGAGTATGTCTTCTGTTAATGAGCTTATGCTTCAAGATGTTTTGGTTAAGGTTCCTGAGGGGATGAGAAGCGAAGAAGCTCTTAAATCTGAGATTCTCAGGAGATTGGATTTGGATCAGTAA 1431 0.4654 MEDLIISPSSSSSLVSLPHENTPTLQQKLQFLLQSQPDWWVYAIFWQTTNDDNGNLYLSWGDGHFQGTKDTSPRLPHHYPILAERMKFMKDIQSLINDNMCNDGEWFYVMSLTRTFSVGDVSSLPAKAFTSGSLIWLKSDHHELQFSNCERAKEAYVHGIQTLIYIPTSNGVLEMGSNDVITENWGLLQHAKSLFGSDLIISMPHNKQLNPIQFFDDQNISFADIGIIAGVQEEDNSNVDDVKKRKERDPNKNKKESSVLKFGSRQRSYADSEHSDSDCALMTEKRAPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKVDEMEGQLQKESNKKVKVEMGDNMDNHSTTTSSVDQTGTNGFALELEVKIIGPDAMVRVQSETANHPGARLMVALRDLEFQVHHASMSSVNELMLQDVLVKVPEGMRSEEALKSEILRRLDLDQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3281g00012 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Gabi3281g00012 476 Coils Coil 339 366 - -
Gabi3281g00012 476 Gene3D - 298 366 IPR036638 GO:0046983
Gabi3281g00012 476 Pfam Helix-loop-helix DNA-binding domain 304 349 IPR011598 GO:0046983
Gabi3281g00012 476 CDD bHLH_AtAIB_like 298 375 - -
Gabi3281g00012 476 MobiDBLite consensus disorder prediction 236 286 - -
Gabi3281g00012 476 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 195 IPR025610 -
Gabi3281g00012 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 301 362 IPR036638 GO:0046983
Gabi3281g00012 476 SMART finulus 306 355 IPR011598 GO:0046983
Gabi3281g00012 476 PANTHER MYC 16 471 IPR045084 GO:0003700|GO:0006355
Gabi3281g00012 476 MobiDBLite consensus disorder prediction 236 311 - -
Gabi3281g00012 476 MobiDBLite consensus disorder prediction 294 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3281g00012 Gabi-Chr3281 78810 80240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3281g00012 21 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 35.110 4.31e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi3281g00012 bHLH-MYC_N 1.5e-45 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3281g00012 - K13422 pcin:129291555 600.512