Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00074 ATGGGCTGTTGCCAATCTCATTTTCCCAAACATTCCAATCCTCAACACAACGACTCTCATTATCACCACAACTTTGCCTCTTCCTCCAACGGCGCTGATAATAATGCCGGTGGCGACGTCCCGGCGTTCTCCGAGTTCTCATTGGCAGACCTCAAAGCCGCCACCAACGGTTTCGCTTCCGACCTCATCATCTCGGAGAGCGGTGAGAAAGCCCCCAATATAGTCTTCAAAGGTCGCCTCCAGAACCATAACCGTCGCTGGATTGCCGTTAAGAGCTTTTCTAAATTGGCATGGCCTGATCCCAAGCAATTCGCTGATGAAGCTTGGGGTGTTGGGCAATTAAGACACCAGAGGCTTGTCAATTTGATTGGTTATTGCTGTGATGGGGATGAGAGGCTCCTTGTTGCAGATTACATGCCCAATGACACTCTCGCCAAACATCTTTTCCACTGGGAAAATCAGACAATTGAGTGGAACATGCGGTTAAGAGTTGCCCTATCCATCACCGAAGCATTAGATTATTGTAGCAACAAAGGTTATCCGTTGTACCATGACTTGAATGCTTACAGAGTTCTATTTGATGAGAATGGTGATCCGCGGCTTTCATGTTTTGGTTTGATCAAGAACAGCAGGGACGGGAAAAGTTATAGCACAAATCTTGCTTATACGCCTCCTGAGTATCTGAGAAATGGGAGGGTGACTCCAGAAAGTGTTATCTTCAGCTTTGGGACTGTGTTATTGGATCTTCTAAGTGGCAAGCACATCCCTCCAGGCCATAATTATGGTAAGCAAAATGTATATCGTATCCTGTTCAGTCCTGGATAG 825 0.4655 MGCCQSHFPKHSNPQHNDSHYHHNFASSSNGADNNAGGDVPAFSEFSLADLKAATNGFASDLIISESGEKAPNIVFKGRLQNHNRRWIAVKSFSKLAWPDPKQFADEAWGVGQLRHQRLVNLIGYCCDGDERLLVADYMPNDTLAKHLFHWENQTIEWNMRLRVALSITEALDYCSNKGYPLYHDLNAYRVLFDENGDPRLSCFGLIKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIFSFGTVLLDLLSGKHIPPGHNYGKQNVYRILFSPG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00074 274 ProSiteProfiles Protein kinase domain profile. 61 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00074 274 MobiDBLite consensus disorder prediction 19 33 - -
Gabi3280g00074 274 MobiDBLite consensus disorder prediction 1 33 - -
Gabi3280g00074 274 Pfam Protein tyrosine and serine/threonine kinase 75 256 IPR001245 GO:0004672|GO:0006468
Gabi3280g00074 274 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 2 260 IPR045845 GO:0004672|GO:0009742
Gabi3280g00074 274 SUPERFAMILY Protein kinase-like (PK-like) 46 263 IPR011009 -
Gabi3280g00074 274 FunFam probable serine/threonine-protein kinase At4g35230 33 138 - -
Gabi3280g00074 274 Gene3D Transferase(Phosphotransferase) domain 1 140 272 - -
Gabi3280g00074 274 Gene3D Phosphorylase Kinase; domain 1 33 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00074 Gabi-Chr3280 492199 494400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00074 10 255 Glycoside Hydrolase AT3G07070 33.984 2.41e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi3280g00074 PK_Tyr_Ser-Thr 3.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00074 K14500 - han:110908055 431.409