Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00044 ATGGGAGATGATGATGCTATGACATCTTCTGGTACCATGATGGAAGCTCCACCTGATGGAACAACCTCAATGGATTTTGATTACATGGGTGAACTTTTCTTAGATGGTTGCTGGGTGGAAACCTTTGCTGATGGATCTGATATGTTGATGCAAAGTCCTTCTTTTTCAAGCCCTCTCTTTGACTCTTCATTCTCTTGGCCTCCCTTGGAGACCAACGAGCCACCCCACAATGGTGAATCTCAGGAAGAAGCTTCTTTTGGCAACCAACCAGTTTGTCAGAACATAATTGATGTTGCTGGTAGTTGTAATCAGGAGTATCGGTCTGAAATTCATTCAGTTGAAAGTGCTTCTGAAGTGGTCAGAAGGTGGTGGATTGCACCCACACATAGTCCAAGACATGGATCTTCTGTAATGGAGAAGCTAATAAGGGCCCTCAAGGGGATAAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTTCCAGATAATAATAGATGGGGTGAACAGATTCTGATAGCTAATGAACTTCTCTTCTCGCTTGAAAGCAGGTCTGCTAATCTTGCAAAGTACCGAGAAATCTCTGTGAGATATCAGTTTTCAGCAGAGGAGGACTCGAAGAGGTTGGTGCCGGGATTGCCTGGACGAGTTTTTAGGGGTAAGGTTCCTGAGTGGACTCCTGATGTTCGATTCTTTAGGAGTGATGAGTACGCACGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACATTGGCACTTCCAATCTTTGAACAAGGTAGCAGGACTTGCTTGGGTGTTGTTGAGGTTGTGATGACTACCCAGCAGATCAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCGATACATTCAAGTTTTCAGAATGTGAAGGCATGCAACAAGTCCTATGAAGCTGCACTACCCGAGATTCAAAAGGCGTTGAGATCTGCATGTGAAATGCACAAGTTACCTTTAGCTCAAACATGGGTCTCATGCATCCTACAAGCAAAAGGGGGGTGTAGGCACTCTGAAGATAATTATTTACACTGTATATCTCCTGTGGAGCATGCTTGTTATGTTGGTGATCCCTCTATCAGGTTTTTTCATGAGGCTTGCACCGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGGGGAGCTTTTATGACAAATCAACCACGCTTCTCAACTGACATAACTTCCTTAAGCAAGATAGACTATCCACTGTCTCATCATGCAAGGTTGTTTGGATTGCGGGCTGCGGCTGCCGTACGCCTCCGAAGCATCTATAGTAGTACAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAAATTGCAATGACAGTGAAGAACAGAAAAAGATGCTTACTTCATTGTCCAAGATTATACAAGGAGTCTGCCATAGCTTGCGGGTTATAACAGATAAGGAATTAGAGGAGGAAACTAACTTACCAGTTGATAAAGTGATAGCCCTTCCAGACAATGGCTTTGCTAGGACTGAAATTTGGTCGGAACTCCAACACAGAGTGATGGTTTCCTCATTGGATACTGAAGAAAAATCAAGTGAAACAATGGGTACAAAATTCTCTGACCTGAGACAGCAACAAGAAAATCCTATTTTAAAAGGAAACCTTGACTGTGTTAGGGAATGTTCTACTTTTGTTGAGGGTAACTTATCAAGTGTGGGAATAAGTAAAACGGAAGAGAAAAGAAGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGGCAACATTTTGCTGGAAGCCTAAAAGATGCTGCGAAGAATATTGGTGTTTGTACCACAACTTTGAAAAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCTTCTAGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGCACCTCTGGTTCATTTCAAATCGATTCCTTCTATTCAAAATTCCCGGATCTGGTAGCTTCTCCAAGTTTATCAGGAACCAACCCATTCTCAACTTTGAATCATAGTGATAATAATATGAACTCATTAAGCACACAGCCAGATCCTAGCTCGTTGAGCCCAGAAGGTGGTGCTTCAAAATCACCCTCTTCTTCGTGCAGTCAACATTCCATTTCAAGCCATTCCTGTTCCATCATGTCAGAGCAACAGCATCACACAAGTAATGCTGCTGGTAACACAGATCCCATGGTTGGTGAAGATTCTACTGTTGGGGTGTTGAAGAGGATCAGAAGTGAAGCAGAGCTTAAAAGCCTGAATCAAGATAGAGAAAAGCTCTTGCCAAGATCCCAAAGCCAGGAAACACTTGGTGAACATGCTAAAGCTGAGTATCACCGACCCTTATTAAAAACTCAAAAGGAGGATGCTCAGAGAGTAAAAGTTACATATGGAGATGAGAAAACCCGGTTTAGAATGCCAAAGAATTGGGGTTACGAGGATCTTTTGCAGGAAATTGCTAAGAGATTTAACGTTAGTGACATGAGCAAATTCGATATCAAATATTTGGACGATGACTCTGAGTGGGTATTACTAACCTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGACTAGTACAATCAAACTTTGTCTACAAGCTTCTAGTCATTGTATCAGAAGTTCTTTAAAATTTAGATAG 2709 0.4208 MGDDDAMTSSGTMMEAPPDGTTSMDFDYMGELFLDGCWVETFADGSDMLMQSPSFSSPLFDSSFSWPPLETNEPPHNGESQEEASFGNQPVCQNIIDVAGSCNQEYRSEIHSVESASEVVRRWWIAPTHSPRHGSSVMEKLIRALKGIKDFNRNKDMLIQIWVPDNNRWGEQILIANELLFSLESRSANLAKYREISVRYQFSAEEDSKRLVPGLPGRVFRGKVPEWTPDVRFFRSDEYARVDHAQEYDVRGTLALPIFEQGSRTCLGVVEVVMTTQQINYGPELESVCKALEAVDLRSSIHSSFQNVKACNKSYEAALPEIQKALRSACEMHKLPLAQTWVSCILQAKGGCRHSEDNYLHCISPVEHACYVGDPSIRFFHEACTEHHLLKGQGVAGGAFMTNQPRFSTDITSLSKIDYPLSHHARLFGLRAAAAVRLRSIYSSTDDFVLEFFLPVNCNDSEEQKKMLTSLSKIIQGVCHSLRVITDKELEEETNLPVDKVIALPDNGFARTEIWSELQHRVMVSSLDTEEKSSETMGTKFSDLRQQQENPILKGNLDCVRECSTFVEGNLSSVGISKTEEKRRAKAEKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGTSGSFQIDSFYSKFPDLVASPSLSGTNPFSTLNHSDNNMNSLSTQPDPSSLSPEGGASKSPSSSCSQHSISSHSCSIMSEQQHHTSNAAGNTDPMVGEDSTVGVLKRIRSEAELKSLNQDREKLLPRSQSQETLGEHAKAEYHRPLLKTQKEDAQRVKVTYGDEKTRFRMPKNWGYEDLLQEIAKRFNVSDMSKFDIKYLDDDSEWVLLTCDADLEECIDVCQSSETSTIKLCLQASSHCIRSSLKFR 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00044 902 SUPERFAMILY CAD & PB1 domains 798 892 - -
Gabi3280g00044 902 Gene3D - 809 891 - -
Gabi3280g00044 902 MobiDBLite consensus disorder prediction 682 748 - -
Gabi3280g00044 902 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3280g00044 902 MobiDBLite consensus disorder prediction 771 796 - -
Gabi3280g00044 902 CDD PB1_NLP 810 890 IPR034891 -
Gabi3280g00044 902 SMART PB1_new 808 891 IPR000270 GO:0005515
Gabi3280g00044 902 Pfam RWP-RK domain 590 638 IPR003035 -
Gabi3280g00044 902 MobiDBLite consensus disorder prediction 66 85 - -
Gabi3280g00044 902 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Gabi3280g00044 902 MobiDBLite consensus disorder prediction 682 752 - -
Gabi3280g00044 902 ProSiteProfiles PB1 domain profile. 808 891 IPR000270 GO:0005515
Gabi3280g00044 902 PANTHER PROTEIN NLP8 77 897 IPR045012 GO:0003700
Gabi3280g00044 902 Pfam PB1 domain 810 889 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00044 Gabi-Chr3280 296315 300843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00044 24 893 NLP Transcription Factor Family AT1G20640 48.864 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi3280g00044 PB1 4.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00044 - - gmx:100790922 1296.57