Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00043 ATGGGAGATGATGATGCTATGACATCTTCTGGTACCATGATGGAAGCTCCACCTGATGGAACAACCTCAATGGATTTTGATTACATGGGTGAACTTTTCTTAGATGGTTGCTGGGTGGAAACCTTTGCTGATGGATCTGATATGTTGATGCAAAGTCCTTCTTTTTCAAGCCCTCTCTTTGACTCTTCATTCTCTTGGCCTCCCTTGGAGACCAACGAGCCACCCCACAATGGTGAATCTCAGGAAGAAGCTTCTTTTGGCAACCAACCAGTTTGTCAGAACATAATTGATGTTGCTGGTAGTTGTAATCAGGAGTATCGGTCTGAAATTCATTCAGTTGAAAGTGCTTCTGAAGTGGTCAGAAGGTGGTGGATTGCACCCACACATAGTCCAAGACATGGATCTTCTGTAATGGAGAAGCTAATAAGGGCCCTCAAGGGGATAAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTTCCAGATAATAATAGATGGGGTGAACAGATTCTGATAGCTAATGAACTTCTCTTCTCGCTTGAAAGCAGGTCTGCTAATCTTGCAAAGTACCGAGAAATCTCTGTGAGATATCAGTTTTCAGCAGAGGAGGACTCGAAGAGGTTGGTGCCGGGATTGCCTGGACGAGTTTTTAGGGGTAAGGTTCCTGAGTGGACTCCTGATGTTCGATTCTTTAGGAGTGATGAGTACGCACGAGTTGACCATGCTCAAGAGTATGATGTGCGTGGAACATTGGCACTTCCAATCTTTGAACAAGGTAGCAGGACTTGCTTGGGTGTTGTTGAGGTTGTGATGACTACCCAGCAGATCAACTATGGCCCTGAACTTGAGAGTGTTTGCAAAGCACTTGAGGCTGTTGATCTTAGAAGCTCGATACATTCAAGTTTTCAGAATGTGAAGCAGGCATGCAACAAGTCCTATGAAGCTGCACTACCCGAGATTCAAAAGGCGTTGAGATCTGCATGTGAAATGCACAAGTTACCTTTAGCTCAAACATGGGTCTCATGCATCCTACAAGCAAAAGGGGGGTGTAGGCACTCTGAAGATAATTATTTACACTGTATATCTCCTGTGGAGCATGCTTGTTATGTTGGTGATCCCTCTATCAGGTTTTTTCATGAGGCTTGCACCGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCTGGGGGAGCTTTTATGACAAATCAACCACGCTTCTCAACTGACATAACTTCCTTAAGCAAGATAGACTATCCACTGTCTCATCATGCAAGGTTGTTTGGATTGCGGGCTGCGGCTGCCGTACGCCTCCGAAGCATCTATAGTAGTACAGATGACTTTGTTCTAGAGTTCTTCTTGCCTGTAAATTGCAATGACAGTGAAGAACAGAAAAAGATGCTTACTTCATTGTCCAAGATTATACAAGGAGTCTGCCATAGCTTGCGGGTTATAACAGATAAGGAATTAGAGGAGGAAACTAACTTACCAGTTGATAAAGTGATAGCCCTTCCAGACAATGGCTTTGCTAGGACTGAAATTTGGTCGGAACTCCAACACAGAGTGATGGTTTCCTCATTGGATACTGAAGAAAAATCAAGTGAAACAATGGGTACAAAATTCTCTGACCTGAGACAGCAACAAGAAAATCCTATTTTAAAAGGAAACCTTGACTGTGTTAGGGAATGTTCTACTTTTGTTGAGGGTAACTTATCAAGTGTGGGAATAAGTAAAACGGAAGAGAAAAGAAGGGCCAAAGCAGAGAAAACTATCACTTTGCAAGTTCTTAGGCAACATTTTGCTGGAAGCCTAAAAGATGCTGCGAAGAATATTGGTGTTTGTACCACAACTTTGAAAAGGATCTGCCGGCAACATGGGATAAAGCGTTGGCCTTCTAGAAAGATAAAAAAGGTTGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCAAGGCACCTCTGGTTCATTTCAAATCGATTCCTTCTATTCAAAATTCCCGGATCTGGTAGCTTCTCCAAGTTTATCAGGAACCAACCCATTCTCAACTTTGAATCATAGTGATAATAATATGAACTCATTAAGCACACAGCCAGATCCTAGCTCGTTGAGCCCAGAAGGTGGTGCTTCAAAATCACCCTCTTCTTCGTGCAGTCAACATTCCATTTCAAGCCATTCCTGTTCCATCATGTCAGAGCAACAGCATCACACAAGTAATGCTGCTGGTAACACAGATCCCATGGTTGGTGAAGATTCTACTGTTGGGGTGTTGAAGAGGATCAGAAGTGAAGCAGAGCTTAAAAGCCTGAATCAAGATAGAGAAAAGCTCTTGCCAAGATCCCAAAGCCAGGAAACACTTGGTGAACATGCTAAAGCTGAGTATCACCGACCCTTATTAAAAACTCAAAAGGAGGATGCTCAGAGAGTAAAAGTTACATATGGAGATGAGAAAACCCGGTTTAGAATGCCAAAGAATTGGGGTTACGAGGATCTTTTGCAGGAAATTGCTAAGAGATTTAACGTTAGTGACATGAGCAAATTCGATATCAAATATTTGGACGATGACTCTGAGTGGGTATTACTAACCTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAATCTTCTGAGACTAGTACAATCAAACTTTGTCTACAAGCTTCTAGTCATTGTATCAGAAGTTCTTTAAAATTTAGATAG 2712 0.4211 MGDDDAMTSSGTMMEAPPDGTTSMDFDYMGELFLDGCWVETFADGSDMLMQSPSFSSPLFDSSFSWPPLETNEPPHNGESQEEASFGNQPVCQNIIDVAGSCNQEYRSEIHSVESASEVVRRWWIAPTHSPRHGSSVMEKLIRALKGIKDFNRNKDMLIQIWVPDNNRWGEQILIANELLFSLESRSANLAKYREISVRYQFSAEEDSKRLVPGLPGRVFRGKVPEWTPDVRFFRSDEYARVDHAQEYDVRGTLALPIFEQGSRTCLGVVEVVMTTQQINYGPELESVCKALEAVDLRSSIHSSFQNVKQACNKSYEAALPEIQKALRSACEMHKLPLAQTWVSCILQAKGGCRHSEDNYLHCISPVEHACYVGDPSIRFFHEACTEHHLLKGQGVAGGAFMTNQPRFSTDITSLSKIDYPLSHHARLFGLRAAAAVRLRSIYSSTDDFVLEFFLPVNCNDSEEQKKMLTSLSKIIQGVCHSLRVITDKELEEETNLPVDKVIALPDNGFARTEIWSELQHRVMVSSLDTEEKSSETMGTKFSDLRQQQENPILKGNLDCVRECSTFVEGNLSSVGISKTEEKRRAKAEKTITLQVLRQHFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGTSGSFQIDSFYSKFPDLVASPSLSGTNPFSTLNHSDNNMNSLSTQPDPSSLSPEGGASKSPSSSCSQHSISSHSCSIMSEQQHHTSNAAGNTDPMVGEDSTVGVLKRIRSEAELKSLNQDREKLLPRSQSQETLGEHAKAEYHRPLLKTQKEDAQRVKVTYGDEKTRFRMPKNWGYEDLLQEIAKRFNVSDMSKFDIKYLDDDSEWVLLTCDADLEECIDVCQSSETSTIKLCLQASSHCIRSSLKFR 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00043 903 Pfam RWP-RK domain 591 639 IPR003035 -
Gabi3280g00043 903 MobiDBLite consensus disorder prediction 1 22 - -
Gabi3280g00043 903 MobiDBLite consensus disorder prediction 683 749 - -
Gabi3280g00043 903 MobiDBLite consensus disorder prediction 66 85 - -
Gabi3280g00043 903 Pfam PB1 domain 811 890 IPR000270 GO:0005515
Gabi3280g00043 903 PANTHER PROTEIN NLP8 77 898 IPR045012 GO:0003700
Gabi3280g00043 903 MobiDBLite consensus disorder prediction 772 796 - -
Gabi3280g00043 903 ProSiteProfiles RWP-RK domain profile. 578 659 IPR003035 -
Gabi3280g00043 903 SUPERFAMILY CAD & PB1 domains 799 893 - -
Gabi3280g00043 903 ProSiteProfiles PB1 domain profile. 809 892 IPR000270 GO:0005515
Gabi3280g00043 903 MobiDBLite consensus disorder prediction 683 753 - -
Gabi3280g00043 903 Gene3D - 810 892 - -
Gabi3280g00043 903 CDD PB1_NLP 811 891 IPR034891 -
Gabi3280g00043 903 SMART PB1_new 809 892 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00043 Gabi-Chr3280 296315 300870 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00043 24 894 NLP Transcription Factor Family AT1G20640 48.808 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi3280g00043 PB1 4.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00043 - - gmx:100790922 1303.12