Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00037 ATGGGAAACTGTTTGGGACAGCCAGGTGATGATAGTAGGATGAGTACTTCTGCCAGCAATAAATCACCCACTTATCGTGCAGAAAGAGATGATGGCCCACATAACAGCGCGAGCGTGGTGAATCAAGGAAGGACAAAAAGTGGAAAGATCGTGACGCCGAATCCAAAGAAGTTCACATTGGATGAGTTGAAGAGTGCCACAAGAAATTTCAGACCAGATACGGTCCTTGGCGAGGGTGGTTTTGGGCGTGTTTTCAAAGGATGGGTCGACCCCATCACCTTCAAGCCCTCCAAAGTTGGCGTTGGAATCCCCGTTGCTGTCAAGAAATCTAACCCCGATAGCCTCCAAGGCCTACAAGAGTGGCAGAGTGAAGTGCAATTTTTGGGGAAGTTTTCTCATCAAAACCTGGTTAAACTACTTGGTTACTGCTGGGAGGAAAATCAATTCCTGCTCGTATACGAATACGTGCAAAAGGGAAGCTTGGAAAGCCACCTCTTTAGAAGAGGCCCAGAACCACTTTCCTGGGATACAAGGCTTAAGATAGCCATAGGAGCTGCCAGAGGTCTTACTTTCTTGCATACATCGGAAAAGTCTGTCATCTATAGAGACTTTAAGTCCTCCAACATTTTGCTTGATAGGGATTTCAATGCGAAGCTCTCAGACTTCGGGTTGGCAAAGTTTGGCCCCGTCAACGGTAGATCCCACATAACTACACGGGTCATGGGCACCTATGGTTACGCTGCCCCCGAATACATGAACACAGGCTTGATAGCACTAGACACAAATCGGCCTACGGGTGAGCAGAATTTGGTGGATTTCGCTAAACCATCTCTAGGTAACAAAAAGAAACTAAAAAGGATCGTCGATCCAAATATGGACGAAGAATATTCAATAACTGCAGCGTTTCAAGTAGCCCTCCTAATACTAAAATGTTTAGAACCTGACCCAAAAAAACGACCATCTATGGAGGAGGTTTTGGGAACCTTAGAAAAGGTTCGAAGCATCAAATATAAACCCAAAGGGAAGAAGAAAGCCGGCGCAGTTCATCAAACAGCAAAACGACCAGACGAGGATCCCACATATAACCAACGTCGGTCTCCTTCAATTCATTGCAACATTAATGGTTATTCCAAATCACAATCTCATTCCTCTCAACAGTAG 1161 0.4539 MGNCLGQPGDDSRMSTSASNKSPTYRAERDDGPHNSASVVNQGRTKSGKIVTPNPKKFTLDELKSATRNFRPDTVLGEGGFGRVFKGWVDPITFKPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVQFLGKFSHQNLVKLLGYCWEENQFLLVYEYVQKGSLESHLFRRGPEPLSWDTRLKIAIGAARGLTFLHTSEKSVIYRDFKSSNILLDRDFNAKLSDFGLAKFGPVNGRSHITTRVMGTYGYAAPEYMNTGLIALDTNRPTGEQNLVDFAKPSLGNKKKLKRIVDPNMDEEYSITAAFQVALLILKCLEPDPKKRPSMEEVLGTLEKVRSIKYKPKGKKKAGAVHQTAKRPDEDPTYNQRRSPSIHCNINGYSKSQSHSSQQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00037 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Gabi3280g00037 386 Pfam Protein tyrosine and serine/threonine kinase 74 256 IPR001245 GO:0004672|GO:0006468
Gabi3280g00037 386 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Gabi3280g00037 386 MobiDBLite consensus disorder prediction 9 23 - -
Gabi3280g00037 386 MobiDBLite consensus disorder prediction 364 386 - -
Gabi3280g00037 386 Gene3D Phosphorylase Kinase; domain 1 40 155 - -
Gabi3280g00037 386 MobiDBLite consensus disorder prediction 1 54 - -
Gabi3280g00037 386 MobiDBLite consensus disorder prediction 35 49 - -
Gabi3280g00037 386 FunFam Os07g0541700 protein 156 243 - -
Gabi3280g00037 386 PANTHER OS01G0588500 PROTEIN-RELATED 31 332 - -
Gabi3280g00037 386 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00037 386 Gene3D Transferase(Phosphotransferase) domain 1 156 354 - -
Gabi3280g00037 386 MobiDBLite consensus disorder prediction 337 386 - -
Gabi3280g00037 386 SUPERFAMILY Protein kinase-like (PK-like) 48 329 IPR011009 -
Gabi3280g00037 386 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Gabi3280g00037 386 MobiDBLite consensus disorder prediction 349 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00037 Gabi-Chr3280 245881 249715 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00037 20 329 Glycoside Hydrolase AT3G07070 41.543 3.22e-79 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3280g00037 PK_Tyr_Ser-Thr 9.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00037 - - aprc:113865973 539.65