Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi3280g00036 ATGGGAAACTGTTTGGGACAGCCAGGTGATGATAGTAGGATGAGTACTTCTGCCAGCAATAAATCACCCACTTATCGTGCAGAAAGAGATGATGGCCCACATAACAGCGCGAGCGTGGTGAATCAAGGAAGGACAAAAAGTGGAAAGATCGTGACGCCGAATCCAAAGAAGTTCACATTGGATGAGTTGAAGAGTGCCACAAGAAATTTCAGACCAGATACGGTCCTTGGCGAGGGTGGTTTTGGGCGTGTTTTCAAAGGATGGGTCGACCCCATCACCTTCAAGCCCTCCAAAGTTGGCGTTGGAATCCCCGTTGCTGTCAAGAAATCTAACCCCGATAGCCTCCAAGGCCTACAAGAGTGGCAGAGTGAAGTGCAATTTTTGGGGAAGTTTTCTCATCAAAACCTGGTTAAACTACTTGGTTACTGCTGGGAGGAAAATCAATTCCTGCTCGTATACGAATACGTGCAAAAGGGAAGCTTGGAAAGCCACCTCTTTAGAAGAGGCCCAGAACCACTTTCCTGGGATACAAGGCTTAAGATAGCCATAGGAGCTGCCAGAGGTCTTACTTTCTTGCATACATCGGAAAAGTCTGTCATCTATAGAGACTTTAAGTCCTCCAACATTTTGCTTGATAGGGATTTCAATGCGAAGCTCTCAGACTTCGGGTTGGCAAAGTTTGGCCCCGTCAACGGTAGATCCCACATAACTACACGGGTCATGGGCACCTATGGTTACGCTGCCCCCGAATACATGAACACAGGTCATCTCTACGTAAAAAGCGATGTTTATGGATTTGGTGTTGTTCTGCTGGAAATGTTAACAGGCTTGATAGCACTAGACACAAATCGGCCTACGGGTGAGCAGAATTTGGTGGATTTCGCTAAACCATCTCTAGGTAACAAAAAGAAACTAAAAAGGATCGTCGATCCAAATATGGACGAAGAATATTCAATAACTGCAGCGTTTCAAGTAGCCCTCCTAATACTAAAATGTTTAGAACCTGACCCAAAAAAACGACCATCTATGGAGGAGGTTTTGGGAACCTTAGAAAAGGTTCGAAGCATCAAATATAAACCCAAAGGGAAGAAGAAAGCCGGCGCAGTTCATCAAACAGCAAAACGACCAGACGAGGATCCCACATATAACCAACGTCGGTCTCCTTCAATTCATTGCAACATTAATGGTTATTCCAAATCACAATCTCATTCCTCTCAACAGTAG 1224 0.4502 MGNCLGQPGDDSRMSTSASNKSPTYRAERDDGPHNSASVVNQGRTKSGKIVTPNPKKFTLDELKSATRNFRPDTVLGEGGFGRVFKGWVDPITFKPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVQFLGKFSHQNLVKLLGYCWEENQFLLVYEYVQKGSLESHLFRRGPEPLSWDTRLKIAIGAARGLTFLHTSEKSVIYRDFKSSNILLDRDFNAKLSDFGLAKFGPVNGRSHITTRVMGTYGYAAPEYMNTGHLYVKSDVYGFGVVLLEMLTGLIALDTNRPTGEQNLVDFAKPSLGNKKKLKRIVDPNMDEEYSITAAFQVALLILKCLEPDPKKRPSMEEVLGTLEKVRSIKYKPKGKKKAGAVHQTAKRPDEDPTYNQRRSPSIHCNINGYSKSQSHSSQQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi3280g00036 407 Pfam Protein tyrosine and serine/threonine kinase 74 348 IPR001245 GO:0004672|GO:0006468
Gabi3280g00036 407 MobiDBLite consensus disorder prediction 385 407 - -
Gabi3280g00036 407 ProSiteProfiles Protein kinase domain profile. 70 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi3280g00036 407 Gene3D Phosphorylase Kinase; domain 1 40 155 - -
Gabi3280g00036 407 CDD STKc_IRAK 76 352 - -
Gabi3280g00036 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Gabi3280g00036 407 PANTHER OS01G0588500 PROTEIN-RELATED 31 353 - -
Gabi3280g00036 407 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Gabi3280g00036 407 SUPERFAMILY Protein kinase-like (PK-like) 48 350 IPR011009 -
Gabi3280g00036 407 MobiDBLite consensus disorder prediction 370 384 - -
Gabi3280g00036 407 MobiDBLite consensus disorder prediction 9 23 - -
Gabi3280g00036 407 MobiDBLite consensus disorder prediction 1 54 - -
Gabi3280g00036 407 MobiDBLite consensus disorder prediction 358 407 - -
Gabi3280g00036 407 MobiDBLite consensus disorder prediction 35 49 - -
Gabi3280g00036 407 Gene3D Transferase(Phosphotransferase) domain 1 156 375 - -
Gabi3280g00036 407 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Gabi3280g00036 407 FunFam Serine/threonine-protein kinase PBS1 156 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi3280g00036 Gabi-Chr3280 245881 249715 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi3280g00036 20 350 Glycoside Hydrolase AT3G07070 45.994 9.06e-95 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi3280g00036 PK_Tyr_Ser-Thr 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi3280g00036 - - aprc:113865973 593.578